Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02186 ACAAACGACGCATCTCTCTCTCTCTCTTCTCTCTCCCTTTCTCTTTCTCTCTCCCTTTCTCTCCCTCTCTATCTCTCTCTTCTTCCTCCTTCGGCTTTGATTTCTCTCTCCTCATTCACGATCCCAATTCCACTAGGGATTCATTTCCGATGCGATTCCGAGCTTGTTAGATCCACCACAAGGTTTCGTTTCCCAGATTCTTTTGTAAAAAATTCTTCCTCTGGCCAACAGGTATTGGACAGTAGTTTAACTGAGGAATCATGTATGCATGGAAAGTTGAAAAAGATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCCGAAGGTCCTATACTGTGCATCAACAACTGTGGATTTTTTGGCAGTGCAGCTACCATGAATATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCCGCATCGTCCATTGGGAATATTATGAATGGGTCATCTAGCAGCACCGAAAATGAACCTGTTGTTGCTGCTAATGTTGAAATCCCACTTATTTCAGTAGAGCCTAAAACTGTCTCTGTGCAACCTTTATTTGGTTCGGTTTCAGAGGGGAGCGAGGAGGCAAAGCCGAAGGATGGTCCTAAACGTTGCAGCAGCTGCAATAAGCGAGTTGGTTTGACAGGGTTCAATTGTCGATGTGGCAATCTTTTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCGTTTGATTACCGCACTGCTGCTCGGGATGCGATAGCTAAAGCAAATCCAGTGGTCAAGGCTGAGAAGCTTGATAAGATCTAA 804 0.454 TNDASLSLSSLSLSLSLSLSLPLYLSLLPPSALISLSSFTIPIPLGIHFRCDSELVRSTTRFRFPDSFVKNSSSGQQVLDSSLTEESCMHGKLKKMDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSTENEPVVAANVEIPLISVEPKTVSVQPLFGSVSEGSEEAKPKDGPKRCSSCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02186 267 Gene3D - 96 164 - -
Vimu5g02186 267 ProSiteProfiles Zinc finger A20-type profile. 107 141 IPR002653 GO:0003677|GO:0008270
Vimu5g02186 267 SUPERFAMILY AN1-like Zinc finger 194 262 IPR035896 -
Vimu5g02186 267 FunFam Zinc finger AN1-type containing 6 183 263 - -
Vimu5g02186 267 Pfam AN1-like Zinc finger 208 244 IPR000058 GO:0008270
Vimu5g02186 267 Pfam A20-like zinc finger 111 134 IPR002653 GO:0003677|GO:0008270
Vimu5g02186 267 SMART A20_3 110 134 IPR002653 GO:0003677|GO:0008270
Vimu5g02186 267 Gene3D - 190 263 IPR035896 -
Vimu5g02186 267 PANTHER AN1-TYPE ZINC FINGER PROTEIN 108 267 - -
Vimu5g02186 267 SMART AN1_Zf_4 208 245 IPR000058 GO:0008270
Vimu5g02186 267 ProSiteProfiles Zinc finger AN1-type profile. 202 248 IPR000058 GO:0008270
Vimu5g02186 267 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02186 Vimu-Chr5 33174869 33178143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02186 103 267 C2H2 Transcription Factor Family AT3G52800 43.636 5.55e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02186 - - gmx:100499857 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02186 5 33174869 33178143 Vimu5g02186 5 33174869 33178143 ECH
Vimu3g00363 3 3455448 3455990 Vimu5g02186 5 33174869 33178143 ECH