Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02180 ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGTTTGGACCTCAATTCACCATCTCTTCTCTCTTCTCCTTCTCCTTCTTCATCACCTCCTCCCATCAATTCATCATTCTATTTTCATACCTACACTTCTCCTCCTCCTCCTCCTCCTCCTCCTCAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAACAACAAGAACATGATTATGAAAAAGAAGAAGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTTCACAAGAAAAAGAAAGAGCTAAGTACAACATCATCATCCAAGTGCTTAGATGAAGAGGATCCTGTCACTGTGGCTTTACACTTAGGGCTTCCAACCACTGCTGCATCTACTGATTTATCTTCAAGCTTATACTCAGCAGAGGTTTCAGACAAAGGAGAAAAAACCACTGATGCTTCGGGGTTACTGTCAGATAGAATCAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAATAACATCGACCATCCGAGAGCAAAACCACTTAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAACCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGAAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA 1017 0.4208 MTNSYRSNDLNFCLDLNSPSLLSSPSPSSSPPPINSSFYFHTYTSPPPPPPPPQTKLLPFLHLRHQQQEHDYEKEEEEEEECLESSFSAMEVHKKKKELSTTSSSKCLDEEDPVTVALHLGLPTTAASTDLSSSLYSAEVSDKGEKTTDASGLLSDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02180 338 Coils Coil 65 85 - -
Vimu5g02180 338 FunFam Zinc finger protein WIP2 231 313 - -
Vimu5g02180 338 MobiDBLite consensus disorder prediction 16 54 - -
Vimu5g02180 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Vimu5g02180 338 PANTHER ZINC FINGER PROTEIN WIP2 36 337 IPR043584 GO:0003700|GO:0010468
Vimu5g02180 338 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Vimu5g02180 338 Gene3D Classic Zinc Finger 239 314 - -
Vimu5g02180 338 SUPERFAMILY beta-beta-alpha zinc fingers 244 282 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02180 Vimu-Chr5 33140364 33142515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02180 35 336 C2H2 Transcription Factor Family AT1G51220 57.500 9.90e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g02180 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02180 - - gmx:100802239 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00453 4 3286304 3288174 Vimu5g02180 5 33140364 33142515 PCT