Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02179 GTTTGCATTTTAGGAGTAGCTGAATCATATGAGGCGGATGGTCTTGTGTTCATTACTTCAACTTTTGTTGACAAATCTGCCTTCATTACTTGTCTGGCAGAAGGATTCAAAATGAGTTGGAACCCACACATGGATGTCCATTACAATACCATTAGTTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTTACCTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAAAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTATCTGAACCTGAGAATTCATCATACTATCGTTACAGTCATGGTTATGAGGTAAATCATCACGAACCACTGGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACAATCAACGAACAGACAGCAGCAGTAAACACAGAATGGGTTGAAGGTGGAAACACTGACACACGAGACAATTCTATTGAATGTCCTCGAAGACATCACAGTAATTCAAGTGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTCGGAACTCAGAGCCGTGGTCTCACCCAAGAACAGATATCCTCACTCCCAGTGTCGAAGTTCAAATGTGGGTTCTTCTTGAGGAAGAAGTCTCGGGGTGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATCTTTATCACGCTAGTTGTGGGAACAGATGGCTCAGCATCAATAAGGCTTGCCCAATATGTTACACAGAAGTGTTTGCCGACAAGTCAAAGCACAAATAA 858 0.4114 VCILGVAESYEADGLVFITSTFVDKSAFITCLAEGFKMSWNPHMDVHYNTISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPENSSYYRYSHGYEVNHHEPLVDEYRRPSENSLTINEQTAAVNTEWVEGGNTDTRDNSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKFKCGFFLRKKSRGERCVICQMEYKRGDKRITLPCKHLYHASCGNRWLSINKACPICYTEVFADKSKHK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02179 285 ProSiteProfiles Zinc finger RING-type profile. 233 273 IPR001841 -
Vimu5g02179 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 279 IPR013083 -
Vimu5g02179 285 FunFam E3 ubiquitin ligase BIG BROTHER 195 278 - -
Vimu5g02179 285 Pfam Ring finger domain 232 273 IPR001841 -
Vimu5g02179 285 SUPERFAMILY RING/U-box 232 280 - -
Vimu5g02179 285 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 41 279 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vimu5g02179 285 SMART ring_2 233 273 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02179 Vimu-Chr5 33128228 33131545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02179 42 284 C3H Transcription Factor Family AT3G63530 43.373 1.01e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02179 K19045 - gmx:100793907 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00459 4 3317007 3318046 Vimu5g02179 5 33128228 33131545 PCT