Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02164 ATGAGGAAGCCCGAGCTGTCTGCAAAAAACAACTCCAACATTAATAACAAGCTTCGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGTTGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTCGGAAACAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGAAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCATCCAACACCTCACCAAATGGAAGCGACTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCAATTATTGACAGGTTGCCTATGCTAGATCATGGACCAGTTTCTGGTGGATTCTTCAATGCTACAGGGCCATGCTTCTCAACACAAAGTGGAGTTGATCACAATGGTTTTTATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGCTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA 978 0.4182 MRKPELSAKNNSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNGSDSSYEPNKDLNMAGFTTSNTHQDQHADFMPMFNSSSSPSPSMHATVLNSIIDRLPMLDHGPVSGGFFNATGPCFSTQSGVDHNGFYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02164 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vimu5g02164 325 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vimu5g02164 325 FunFam MYB transcription factor 17 73 - -
Vimu5g02164 325 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vimu5g02164 325 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vimu5g02164 325 FunFam Transcription factor MYB46 74 143 - -
Vimu5g02164 325 CDD SANT 75 115 IPR001005 -
Vimu5g02164 325 SMART sant 19 69 IPR001005 -
Vimu5g02164 325 SMART sant 72 120 IPR001005 -
Vimu5g02164 325 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vimu5g02164 325 Gene3D - 74 144 - -
Vimu5g02164 325 Gene3D - 17 73 - -
Vimu5g02164 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vimu5g02164 325 PANTHER MYB DOMAIN PROTEIN 55 15 265 - -
Vimu5g02164 325 CDD SANT 23 67 IPR001005 -
Vimu5g02164 325 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02164 Vimu-Chr5 33045405 33047336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02164 1 318 MYB Transcription Factor Family AT5G12870 45.768 1.36e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g02164 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02164 K09422 - gmx:100786151 571.237