Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02160 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGAAGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCTGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGTTCGTGCTGCTGCTTCTGCTTCTGGTTTTTGCTTTTTCTTGCTGCGTGTGGAGGAGGCACGTGCTGTGGGGCAGCTGAGGAATGAAAGATTGGCTAACTTGGTTGGGTGCTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACTAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAGCATATCCCACCGAGTCATGCACTTGATCTTATAAGAGGCAAAAATTTTCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAATATGAACCTCGCGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGCTTTCCTTTCAAATGTGGACAAATCAAATACAAGATACTCTAAATTCTAAGAAGCAAGGAGATTCTGCTTTCCATGCCAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCTCAAGAGGCACTTGGAGATGCCATGCATGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTTCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAGAAACTGA 1530 0.4451 MGARCSKFSLCWWPSHVKSNLHDLSDNEDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRTVAVKRFNKSAWPDSRQFLVRAAASASGFCFFLLRVEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQDTLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMHAQSISPTWPTAYYLQAASLFSLGMDNDAQESLKDGTTLETRKYRN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02160 509 ProSiteProfiles Protein kinase domain profile. 60 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02160 509 Gene3D Tetratricopeptide repeat domain 403 508 IPR011990 GO:0005515
Vimu5g02160 509 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
Vimu5g02160 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 508 IPR045845 GO:0004672|GO:0009742
Vimu5g02160 509 FunFam probable serine/threonine-protein kinase At4g35230 402 509 - -
Vimu5g02160 509 SUPERFAMILY TPR-like 407 505 IPR011990 GO:0005515
Vimu5g02160 509 Pfam Protein tyrosine and serine/threonine kinase 119 328 IPR001245 GO:0004672|GO:0006468
Vimu5g02160 509 FunFam probable serine/threonine-protein kinase At5g41260 154 345 - -
Vimu5g02160 509 Gene3D Transferase(Phosphotransferase) domain 1 154 345 - -
Vimu5g02160 509 Gene3D Phosphorylase Kinase; domain 1 31 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02160 Vimu-Chr5 33022265 33025492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02160 45 357 Glycoside Hydrolase AT3G07070 32.174 8.18e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vimu5g02160 PK_Tyr_Ser-Thr 3.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02160 - - gmx:732542 948.347