Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02137 ATGCAATCTCTAAAGTTACACCCTGCTCTTTTATTTGCACTTTTCAATCAATTCTCTTCTCAGTCTCTGACATCCTTCCTTTCTTTCTCAACTAAATGCCGTTGCCTACACTTCAACGTAACCACTTCAATGATTGATTACCTAAATTCCAACTTCCAGTTCTCAAAAACACAATCCCTTTATATCTCCAAACGTGTTTCACGGGGCAAATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCGCAAAGCCAGATTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAGACGTTGACAAAATCTTAAGATCCAAAATTGAGTTCTTTCAGATGTCTGGATTCCAGGGTCGCGAGTTATGCAGCTTCATTTCAAAGCATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTGTGCGACCAGAAAGATTTTATTCTTGTGTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGGTTTATGGATAATGCCGTCTTCTTGGAGAGGTGTGGCATTCTTGGGACTCATCTTGCATTGCTACTCAAACTTCACCCAAGGATTTTCATTGCACAGCAGTCCACTATTCAAAATCGTGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGCTGAAACTAATTAATAGTTTTGGGTTTTCCAACGATGAGGGCCTACAAATGTTCAAGAGAACCCCGACTTTGTTCAGAACATCAGAGATGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCACACAGTTATGCTGCCTAAGTCAGTCCTTATTCACCGGCCTCAGATTTTAATGTACAACATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCCAAAAATCTCTGCAAGAAAGTCCCCAATTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTTTTGGACAAGTATATATCACAGTTCGGGGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1134 0.4012 MQSLKLHPALLFALFNQFSSQSLTSFLSFSTKCRCLHFNVTTSMIDYLNSNFQFSKTQSLYISKRVSRGKFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTDVDKILRSKIEFFQMSGFQGRELCSFISKHPSILTHSLKKTLVPSVEAIRKIVCDQKDFILVLHRCGWILPKYKRFMDNAVFLERCGILGTHLALLLKLHPRIFIAQQSTIQNRVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINSFGFSNDEGLQMFKRTPTLFRTSEMKLKVGMKFFLHTVMLPKSVLIHRPQILMYNMEDRVLPRYKVFQLLKSKNLCKKVPNYIHVLCLSEEMFLDKYISQFGENAEELLVAYKGHYLEA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02137 377 PANTHER CGI-12 PROTEIN-RELATED 41 358 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 Pfam mTERF 79 167 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 Pfam mTERF 245 351 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 FunFam Mitochondrial transcription termination factor-like 143 363 - -
Vimu5g02137 377 Gene3D Transcription termination factor 3, mitochondrial 53 180 IPR038538 -
Vimu5g02137 377 Gene3D Transcription termination factor 3, mitochondrial 181 362 IPR038538 -
Vimu5g02137 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vimu5g02137 377 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02137 Vimu-Chr5 32864266 32866745 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu5g02137 mTERF 7.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02137 K15031 - qsa:O6P43_021347 331.643