Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02127 ATGGAATCTGATCATGATCATCACCAAGCAGCAATATCTGAAAATCCCTCTGATGGAGAGGACCAAGGTGCAACTCACGTGGCATCCAGGTCCTACGAGTGCAACTTCTGCAGGAGGGGCTTCTCCAATGCACAAGCGCTGGGGGGGCACATGAACATCCACAGAAAAGACAAAGCCAAGCTCAAGCAACAACAGTCTTCAAATCAACCATCTTTGGACAAGGTTGTCTCTCCACAGGATCAGACCAAGTCTGGTGAAGAACGGAACACGCCAAAATGGAATTGGAATGTGTCTCAAGAAGAACATGCCTCCTCTAGAGCATCTCACACAAGGCAACAGCTTCCACTCTTTGAAGAATCACCAACCAGCAGTGAAACACTGAAGCCACAAGGT 393 0.4835 MESDHDHHQAAISENPSDGEDQGATHVASRSYECNFCRRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQPSLDKVVSPQDQTKSGEERNTPKWNWNVSQEEHASSRASHTRQQLPLFEESPTSSETLKPQG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02127 131 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Vimu5g02127 131 PANTHER OS07G0101800 PROTEIN 11 117 - -
Vimu5g02127 131 MobiDBLite consensus disorder prediction 56 131 - -
Vimu5g02127 131 MobiDBLite consensus disorder prediction 63 131 - -
Vimu5g02127 131 Gene3D Classic Zinc Finger 20 114 - -
Vimu5g02127 131 MobiDBLite consensus disorder prediction 1 28 - -
Vimu5g02127 131 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vimu5g02127 131 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02127 Vimu-Chr5 32828481 32828936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02127 11 80 C2H2 Transcription Factor Family AT3G09290 54.286 2.68e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g02127 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02127 - - vun:114170729 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02127 5 32828481 32828936 Vimu5g02127 5 32828481 32828936 ECH