Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02118 ATGGGGGAAGAGGTGAAGACGACCGAGTACGACGAAGAGCGGGTCATGGAGTGGGAAGTGGGTCTCCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATTCCGCCGGAGCTCGCCACAGCATTCAGCATATCTCCGGAGCCCCACCGCACCGCCCTAGACGTCAACAGGGCCTCACGCAACACGCTCTCCACGCTGCGCGGCGGTGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCAACACCACGAGGAGGACGAGGAGGAGGACGACGAGGACACCGATCGCGACGGCTCGGGGTCGGATTCTCGGAAGCATAGGAAGATCGAGTGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGAACTCGGCGGAGCGGACAGCAGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTCGACGTGGTGGCTCACCTTGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTGGCGAGTCATCTTCAGAAGTATCGGCTTTACCTGAAGCGGATGCAGGGTCTCTCCAACGAAGGTCCTTCTTCATCGGATCAGTTATTCGCTTCCACACCTGTGCCTCAGAGTTTGCACGACTCTGCTCCTCCCAGTGCCCATTCCCATGGTCAATCCCATGGCCATGCCAATGCTCATCTTCCTGTTCCCATGATGTCTATGCCCTATCCCCCTCCCATGATGTCCATGCCTGTCCTCGGCATGCCCCATGCCCATGGCCACATGGGAATCCCTATGCCTACTTCATCCGCCACCTCAGCTTACCATCCTTACAACATGCTGCACCAAAGGGATTGGACTCACCTTGCTCCCAATGATAAATGA 906 0.5971 MGEEVKTTEYDEERVMEWEVGLPTANDLTPLSQPLIPPELATAFSISPEPHRTALDVNRASRNTLSTLRGGGSVHQAFSSSNNHQHHEEDEEEDDEDTDRDGSGSDSRKHRKIECVAEEADSAVRTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGQSHGHANAHLPVPMMSMPYPPPMMSMPVLGMPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWTHLAPNDK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02118 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 271 IPR044841 GO:0003700|GO:0006355
Vimu5g02118 301 MobiDBLite consensus disorder prediction 65 81 - -
Vimu5g02118 301 MobiDBLite consensus disorder prediction 65 113 - -
Vimu5g02118 301 MobiDBLite consensus disorder prediction 198 233 - -
Vimu5g02118 301 Gene3D - 133 196 - -
Vimu5g02118 301 SUPERFAMILY Homeodomain-like 135 194 IPR009057 -
Vimu5g02118 301 MobiDBLite consensus disorder prediction 198 240 - -
Vimu5g02118 301 FunFam Two-component response regulator 133 196 - -
Vimu5g02118 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 193 IPR017930 -
Vimu5g02118 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Vimu5g02118 301 Pfam Myb-like DNA-binding domain 141 189 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02118 Vimu-Chr5 32792338 32796167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02118 1 221 G2-like Transcription Factor Family AT3G46640 61.317 1.25e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu5g02118 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02118 - - aprc:113858844 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02118 5 32792338 32796167 Vimu5g02118 5 32792338 32796167 ECH