Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02113 ATGAATTCCGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAGCTGTACCCGCTTCGTTCACCTCTCATCTCAGGCCACCATCGCCTGCCCTCACTGCCAGAGTGGCTTCGTTGAAGAGATCCGTCCCGGATTCCGCCGCCGCCGTCGCGATGCCGCTGGCAACCGCTCCCCCTTTAACCCCGTCATCGTTCTTCGGGGATCCGGCGATGACTCCACCGCCGAACACGAAGGCGCCAGCACCTTTGAGCTCTTCTACGACGACGGCGACGGCACTGGCCTCCGTCCGCTCCCGCCCACCATGTCGGAGTTCCTCCTCGGCTCAGGCTTCGACCGCCTACTCGAACAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAATCCATGCCGACGGTCGAGATCGGTGAAGCGCAGGTCGAGACCGAGGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGCTCCACGCGGAGGCGCGCGAGTTACCCTGCAAACATATTTACCACTCCGATTGTATCCTCCCGTGGCTCTCCATGCGAAACTCGTGTCCGGTGTGCCGACACGAGCTTCCTTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCGATAGGGTTGACTATCTGGAGGCTTCCAGGAGGGGGATTCGCCGTTGGTCGATTTTCCGGCGGACGCAGGGCCGGAGAGAATCATTTCCCGGTGGTGTATACGGAGATGGACGGTGGACTGAACACGAACGGAGCTCCGAGGAGGATTTCTCGGTCGGTGAGAAGCAGCAGGGTTAGGGAGAGTCGAGGATTTGGTAGGGTTGTTCGCAACTTCTTTTCATTCTTTGGAAGGATCGGTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCTGAACATGGTTCCGTGAGTAGAAGCCGTAGTCGTGTGAGTTCAGTCTTCAGCAGAAGCTCACGGAGACATAGCAGAACTTTTGTTTTGGATGATTAA 1020 0.5843 MNSDTQHGTPSYWCYSCTRFVHLSSQATIACPHCQSGFVEEIRPGFRRRRRDAAGNRSPFNPVIVLRGSGDDSTAEHEGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEAQVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENHFPVVYTEMDGGLNTNGAPRRISRSVRSSRVRESRGFGRVVRNFFSFFGRIGSRNSSSSLSSSEHGSVSRSRSRVSSVFSRSSRRHSRTFVLDD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02113 339 Pfam Ring finger domain 157 199 IPR001841 -
Vimu5g02113 339 MobiDBLite consensus disorder prediction 299 324 - -
Vimu5g02113 339 CDD RING-H2_RNF126-like 158 199 - -
Vimu5g02113 339 SMART ring_2 158 198 IPR001841 -
Vimu5g02113 339 Pfam Protein of unknown function (DUF1117) 219 329 IPR010543 -
Vimu5g02113 339 SUPERFAMILY RING/U-box 138 209 - -
Vimu5g02113 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 206 IPR013083 -
Vimu5g02113 339 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Vimu5g02113 339 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Vimu5g02113 339 FunFam E3 ubiquitin-protein ligase RING1-like 120 205 - -
Vimu5g02113 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02113 Vimu-Chr5 32748962 32750044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02113 97 205 C3H Transcription Factor Family AT5G01980 46.789 1.31e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00486 4 3519006 3520121 Vimu5g02113 5 32748962 32750044 PCT