Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02109 ATGCGGGGTGTTTGCGGTGGTCATACGGCAATGCAGCGATCCGACTCTTTTTCTCCCATTTCCGTCACACTCTTTTCTCTGGGTGACTTCTTCCAAACTCTCCAAACTCTACCTTTGTTATTCGTCGCGGTGCAGATCGGGGCATTCACTTCGATTTTTAGAAGACGACGACCCATAAGGCCAGAACGGATATTGCATATCCGTTTGGCCTTGAAACGGGTGTCGCATATCCGTCGATATATGTCGCACATCCGTCTCTCGCCACCGCACCAAGAAGACCACAACACCACCCCTTCGTCGGTCCCTGCCACAGCCTCCCTACGCCGCTGGGATCACCGCTTCGCCAGATGGAGCCGTGCAGGTGCCAACATGTTAACCAAGGTGAAGAAGAATATCGGCAACGCTCAGCTCTGGATGAGGTTCGACCGATCCGGTAGGTTCGAGCTCGTGGAGTGGGAGAAGAACGCCATTTTCCACCATGCCTTGATTCCCGCTCGAGACCTGAGAATCCTTGGCCCCGTCTTCTCCCATTCCTCGAACATCCTCGCTGGAGAGAAAACAATGGTTGTTAATTTGGAGTTTATAAAGGCTATAGTGACTCTTCTGGGCAAGTCTCAACCGAAACTTCTCGGCGCTGTGGAGGAGCAGGAAGGTGAAATTTGGCCTGAACTTTCGTTTGAGTTTCAAGTTTTGGAAATTGCTTTGGAGGCTGTGTGTACTTATCTAGACTCCAGTGTGGCAGACCTTGAGAGAGGTGCTTACCCTGTGTTGGAACATTGGCTAGGAATGTTAGTACCAAAAATCTTGAACATGGAGCAAATGAGGAGGTGGAGGGAGCAACACCCAAATGGTTGTGTTGTTTGGGTGATTGTAGAGGAAGCAACGTCCAAAGCGTGTTTGCGTTGTGCAAGTGATGCATATTTTTTCAGAGTGAAACCTATGTCTATATCTATATCAGAGGCAGAAAGGAGAAAAAGATGCTTTATAGCACCGAATCAGGAAGAAGAGCATCTTGAGAAAATGGCAGTAGTTTTGTTGAGGGATACAGATTTGGATGGTCCAGGTCCAGGTCCAGCATTGCTAGTTCTAGATATTACTGTTGCTTGGTTTTTGATGGATGAAAAGTGGAAGCTGTCAAAGAAAGAAGCAGGTTGCAGCAGCCAGAATAGCACATCATCCACCAAGTCATTGTTCTCAAGGAGTTGCTCAACAAGAGGCTCTTCTTCAAACTCCCCCCTCTTGAGGAGCTTATCCCAAAAGAGTTCCTCCACTTCAAAAACCAGCATCCCTAGGAGCTTCTCTCAGAAGAACCCCTCCATTGGTAAAAAATGCACCAGCTTAGCTAAGGAGCACAGAGCCAGATTTTACATCATGAGGAGGTGTGTAGCCATGTTAGTCTGCTGGCACAAACATGGGGATTCATGA 1425 0.4814 MRGVCGGHTAMQRSDSFSPISVTLFSLGDFFQTLQTLPLLFVAVQIGAFTSIFRRRRPIRPERILHIRLALKRVSHIRRYMSHIRLSPPHQEDHNTTPSSVPATASLRRWDHRFARWSRAGANMLTKVKKNIGNAQLWMRFDRSGRFELVEWEKNAIFHHALIPARDLRILGPVFSHSSNILAGEKTMVVNLEFIKAIVTLLGKSQPKLLGAVEEQEGEIWPELSFEFQVLEIALEAVCTYLDSSVADLERGAYPVLEHWLGMLVPKILNMEQMRRWREQHPNGCVVWVIVEEATSKACLRCASDAYFFRVKPMSISISEAERRKRCFIAPNQEEEHLEKMAVVLLRDTDLDGPGPGPALLVLDITVAWFLMDEKWKLSKKEAGCSSQNSTSSTKSLFSRSCSTRGSSSNSPLLRSLSQKSSSTSKTSIPRSFSQKNPSIGKKCTSLAKEHRARFYIMRRCVAMLVCWHKHGDS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02109 474 Gene3D - 124 200 - -
Vimu5g02109 474 PANTHER DVL13 372 474 - -
Vimu5g02109 474 MobiDBLite consensus disorder prediction 384 441 - -
Vimu5g02109 474 Gene3D Magnesium transport protein CorA, transmembrane region 201 281 - -
Vimu5g02109 474 Pfam DVL family 449 467 IPR012552 GO:0008285
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02109 Vimu-Chr5 32725403 32732162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02109 127 259 MRS2 Gene Family AT3G58970 50.602 2.23e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02109 K16075 - gmx:100812561 200.675