Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02104 ATGGATTCCCTTTTGGACAATTTTCCTGGTTCGGTAAATGGGTTCATATCTGAAAACGGTTCTGTCTCGTTGTTTACGAATCAGAACATGGTAAGTGAGTTCAAGTTGGAAGATTTATCTGTCTCGGTGTTTCCGAATCAGAAGGGGCGAAGTGAATTCAAGTTGGATGATTCGCGTTCCCCGTCGGAGTCTGCCTCTGATGATGCTCCCTCTTCTGGGACAAGCTCTGACGGAGAACACACAGAGAGTACTAAACTCTGCAATCCCATGCTCAGGTTTATAAGTGATATCCTCATGGATGAAGAGGATGATTTGGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGACTCCAGGCTGCTGAAAAATCATTCTATGATGCTTTGGTTCATAGTCACCCATCATCACCTCGTCAATTTAACGATAACCCTGACCCAGATGATAATTTCGGTGGAACCACTAGTTCTGAGAGTTACGGCAGTTATACCACTGACCATTCATGCGAGTCTGATAAGTTTAACGGTGCTGGTGATTTTGAATCTTATTTGCTACAAGGATCGCTGCATAATTCTCCGGAACACGCTTATGTTACTCCTGATCTGATTAGAGAGGCACAAGCTGGGTTCCATTTTTCAAATGGAGCTTGGAATTTGATTCAGTCGCAGAACAAGGCGGGCGTAATTGAAGAGAGTGTGACGAGGACAGGCAAAGGATCACGGGAGAAGAGGAGCCATCTCATGAAAGATGATGTCTCACATGTAGAAGAGGAGAGAAGCAATAAGCTTTCAGCTGTCTACTCTGATGATTCGGAGTCATGTAGCATGTTCGATGAAGTGCTGCTTTGCAATGATGGCAAGAGTCCAGCCTTTTGTAAATCTGACCGTGAACCTTCATCGTTACAGCTTGCTGATTCGGGAGGATCTAATGGGAAGAAAACACGTTCGAAGAAAGGTTCGAACAAGGGAAAAAATGCAAGAACAACGGTGGATTTATGGACTTTGCTAACTCAATGCGCACAAGCTGTGGCTAGCTTTGACCCAAGGACTGCAAATGAAATCCTCAAGCAGATTAGGCAGCACTCTTCACCTTTAGGCGATGGACTTCAGCGCTTGGCTCACTACTTTGCGGATGGCCTTGAGACAAGGTTAGCTGCTGGGACACCAAAGTTCATGCTGTTTCAGTCAGCATCTGCTGCAGATATGTTAAAAGCTTACAGAGTGTATGTCACATCATCACCATTTCACTGGATGTCATTTTTTATGGCTAACCGTACTATTCTGAAGTTTACACAAAGTGAAAGCAGTATTCACATTATTGACTTTGGGATTAGCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGGCTTTCACAAAGACCAGGCGGTCCTCCAAAGATTCGTATAACAGGAATTGATTTTCCTCAGTCAGGGTTTAGGCCAGCTGAAAGGGTAGAGGAGACGGGGCGACGCTTAGAGAAGTACTGCAAGAGATTTGGAGTCCCTTTTGAGTACAATTGCCTTGCTCAGAAATGGGAAACCATAAGACTTGAGGACCTCAAACTTGATAGGAGTGAAGTAACTGTGGTTAACTGTATGTACAGATTGAAGAACCTGTCGGATGAAACTGTGACTGTAGACTGTCCTAGAGATGCTGTGCTGAGGTTGATCAGGAGGATCAATCCGACCATCTTCATGCATGGGGTTGGCAATGGCACCTACAATGCACCATTCTTCTTGACAAGGTTCAGGGAAGCACTCTTCCACTTCTCAGCATTGTTTGATATGTTTGAAGCTAATGTGCCTCGGGAAGATCCATCTAGACTTATGTTTGAGAAAGGGTTGTTTGGAAGGGACGCAATCAATGTCATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGAATCAGAGAGCAAGGTTCAAGCAACTTCCATTAAGCAGAGACCTCGTGAACAAAGTAAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTACAGTAGATGAGGATGGCAAGTGGGTTTTGCAAGGATGGAAAGGGCGTATTCTTTTTGCTCTTTCCTGTTGGGTTCCTGCTTGA 2106 0.4482 MDSLLDNFPGSVNGFISENGSVSLFTNQNMVSEFKLEDLSVSVFPNQKGRSEFKLDDSRSPSESASDDAPSSGTSSDGEHTESTKLCNPMLRFISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDALVHSHPSSPRQFNDNPDPDDNFGGTTSSESYGSYTTDHSCESDKFNGAGDFESYLLQGSLHNSPEHAYVTPDLIREAQAGFHFSNGAWNLIQSQNKAGVIEESVTRTGKGSREKRSHLMKDDVSHVEEERSNKLSAVYSDDSESCSMFDEVLLCNDGKSPAFCKSDREPSSLQLADSGGSNGKKTRSKKGSNKGKNARTTVDLWTLLTQCAQAVASFDPRTANEILKQIRQHSSPLGDGLQRLAHYFADGLETRLAAGTPKFMLFQSASAADMLKAYRVYVTSSPFHWMSFFMANRTILKFTQSESSIHIIDFGISYGFQWPCLIQRLSQRPGGPPKIRITGIDFPQSGFRPAERVEETGRRLEKYCKRFGVPFEYNCLAQKWETIRLEDLKLDRSEVTVVNCMYRLKNLSDETVTVDCPRDAVLRLIRRINPTIFMHGVGNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRARFKQLPLSRDLVNKVKEMVKKEYHKDFTVDEDGKWVLQGWKGRILFALSCWVPA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02104 701 MobiDBLite consensus disorder prediction 51 83 - -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 132 163 - -
Vimu5g02104 701 ProSiteProfiles GRAS family profile. 322 699 IPR005202 -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 234 254 - -
Vimu5g02104 701 Pfam GRAS domain family 333 698 IPR005202 -
Vimu5g02104 701 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 260 693 IPR005202 -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 293 324 - -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 298 313 - -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 64 83 - -
Vimu5g02104 701 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02104 Vimu-Chr5 32705809 32707914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02104 242 701 GRAS Transcription Factor Family AT1G07530 56.531 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu5g02104 GRAS 9.6e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02104 - - gmx:100815586 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00495 4 3590889 3592832 Vimu5g02104 5 32705809 32707914 PCT