Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02098 ATGATGAAACTTAAGCATGGGATTAGAGCGGTAGGTGAAGCGGGAAATCATGTTATTAGCCATAATCTGCAGATTATTCGTCTTGGGAAACTGGGAAAAGTTGAAGACGCTATCAGAATATTCTCTAACATGACCTACAAAAATCTTGTAACATACAATTCCATGGTATCCCTTTTAGCCAAAAATGCTAGAATTAGTGATGCTAGACGATTGTTTGACAAAATGTCTCCAAAAAACATTGTTTCTTGGAACTCCATGATTGCTGGATATCTTCACAACAACATGGTTGAAGAAGCCACTGAGCTGTTTGATGCAATGCCTGAAAGAGACAATTTTTCGTGGGCTTTGATGATAACTTGCTATACACGGAAAGGGGATCTTGATAAGGCTAGAGAATTGCTTGAGTTGGTTCCTGATAATGGTGACCTTAGTTCTGCTTGGCAATTGTTTGAAAATATTCCAAATCCTAATGTTGTCTCTTGGGTTACAATGCTGTGTGGGTTTGCACGATACGGAAAGATTATAGAAGCTAGAAGACTTTTTGACAAGATTCCCAGAAAGAATGCGGTTTCTTGGAATGCAATGATTGCAGCCTATGTCCAGGATATACAAATTGATGAAGCTGTTAAGCTGTTCAAGAAAATGCAGCACAAAGATAGAGTCTCATGGACTACAATAATTAATGGGTACATTCGAGTTGGTAAGCTTGATGAAGCACGTGATGTTTACAATCAGATGCCTTACAAAGACATTGGAGCGAAAACGGCATTGATAGAACACATCTCATGGATATCAAGTCCTTCCGTTACCACTTCAAAGGATAATTTTACAGTTGTTCCAGAAGATGACCCTTTAGTATGGGTTTGTAGTGAAGATGATCCTGAAAACTGGCATGTTCACATCTTCCGCTCCATTGACTCGGGGTTCCTCAAAGGATTTTCTAAACATGTTGATGTTCCTCTGTCCCAGAAGAAACTGTTCAAACAGCGTACATTCAAGCGATCAGATCTGCCCAACACTTTATTTATATTGAAAACCAATACTTCATTTGATCATCATGTGCATGGCCATAAAGATGAAGGGGTTGAAAATCTCATCCCAATGTTGTTGGCACTGAAAATTACAAGTAAAATCAGAGCTGAGGAAAGATTTGCCGTCTATGTTGTTTCACCAATGTGGCCAGGAGGCGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGATTACAGTGTAA 1242 0.3937 MMKLKHGIRAVGEAGNHVISHNLQIIRLGKLGKVEDAIRIFSNMTYKNLVTYNSMVSLLAKNARISDARRLFDKMSPKNIVSWNSMIAGYLHNNMVEEATELFDAMPERDNFSWALMITCYTRKGDLDKARELLELVPDNGDLSSAWQLFENIPNPNVVSWVTMLCGFARYGKIIEARRLFDKIPRKNAVSWNAMIAAYVQDIQIDEAVKLFKKMQHKDRVSWTTIINGYIRVGKLDEARDVYNQMPYKDIGAKTALIEHISWISSPSVTTSKDNFTVVPEDDPLVWVCSEDDPENWHVHIFRSIDSGFLKGFSKHVDVPLSQKKLFKQRTFKRSDLPNTLFILKTNTSFDHHVHGHKDEGVENLIPMLLALKITSKIRAEERFAVYVVSPMWPGGDPKTGAMQEILFWQITV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02098 413 Pfam PPR repeat 48 76 IPR002885 -
Vimu5g02098 413 Pfam PPR repeat family 187 218 IPR002885 -
Vimu5g02098 413 Pfam PPR repeat family 78 109 IPR002885 -
Vimu5g02098 413 SUPERFAMILY TPR-like 67 245 IPR011990 GO:0005515
Vimu5g02098 413 Gene3D Tetratricopeptide repeat domain 2 78 IPR011990 GO:0005515
Vimu5g02098 413 Gene3D Tetratricopeptide repeat domain 79 140 IPR011990 GO:0005515
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 113 138 IPR002885 -
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 50 75 IPR002885 -
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 81 110 IPR002885 -
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 159 186 IPR002885 -
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 190 218 IPR002885 -
Vimu5g02098 413 NCBIfam pentatricopeptide repeat 221 246 IPR002885 -
Vimu5g02098 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Vimu5g02098 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 48 82 IPR002885 -
Vimu5g02098 413 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 48 183 - -
Vimu5g02098 413 Gene3D Tetratricopeptide repeat domain 141 304 IPR011990 GO:0005515
Vimu5g02098 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 187 IPR002885 -
Vimu5g02098 413 Pfam PPR repeat 112 141 IPR002885 -
Vimu5g02098 413 Pfam PPR repeat 221 249 IPR002885 -
Vimu5g02098 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vimu5g02098 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02098 Vimu-Chr5 32663455 32668492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02098 258 410 Phospholipase D Gene Family (Wang group) AT4G35790 51.515 2.29e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02098 - - qsa:O6P43_013959 356.681