Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02094 ATGTGCTTAACCAACTACATTTTCTTTTCGATTTTAGGTGGAGCGTGTGGGTACGGGAATCTGTACAGCCAAGGCTACGGTGTCAACACGGCGGCATTAAGCACAGCGCTTTTCAACAATGGCCTCAGCTGCGGCGCGTGCTTTGAGATAAAGTGCGCTAACGACAGACAGTGGTGTCACTCGGGAAGTCCTTCCATCTTCATCACGGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATTGCTGAATACCGAGCCGGAATTGTCCCCGTTGCCTTTCGCCGGTTCGTCACCCTTCACGTTTCTTTTATCATCTTTAAACTAGAAAGATTACATTTTTAG 414 0.4952 MCLTNYIFFSILGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRFVTLHVSFIIFKLERLHF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02094 137 Pfam Lytic transglycolase 30 116 IPR009009 -
Vimu5g02094 137 PRINTS Expansin signature 52 63 IPR002963 GO:0009664
Vimu5g02094 137 PRINTS Expansin signature 102 115 IPR002963 GO:0009664
Vimu5g02094 137 PRINTS Expansin signature 66 76 IPR002963 GO:0009664
Vimu5g02094 137 PRINTS Expansin signature 25 39 IPR002963 GO:0009664
Vimu5g02094 137 PRINTS Expansin signature 85 102 IPR002963 GO:0009664
Vimu5g02094 137 SMART dpbb_1 30 117 IPR007112 -
Vimu5g02094 137 Gene3D - 5 121 IPR036908 -
Vimu5g02094 137 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576
Vimu5g02094 137 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Vimu5g02094 137 PRINTS Expansin/Lol pI family signature 12 30 IPR007118 GO:0005576
Vimu5g02094 137 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 13 119 IPR007112 -
Vimu5g02094 137 SUPERFAMILY Barwin-like endoglucanases 4 119 IPR036908 -
Vimu5g02094 137 CDD DPBB_EXPA_N 12 119 - -
Vimu5g02094 137 PANTHER EXPANSIN-A15 12 119 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02094 Vimu-Chr5 32648272 32648685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02094 12 119 Miscellaneous Gene Families AT2G28950 90.741 2.97e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02094 - - gmx:100789913 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00503 4 3654551 3655623 Vimu5g02094 5 32648272 32648685 PCT