Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02093 ATGGGTGGATTGGTTGGTATTTACTGCAGAGTGCCATGTAGAAAGCACGGAGGGATAAGGTTCACCGTCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCAGGTGCGGGGGATATCGTGCGCACTTACGTGAAGGGGTCCCGAACCGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGACGCTGTCGTTTCGCGTGACGGGCAGCGACCGCCGCACATCCACCTCGTGGAACATCGCTCCAGCCAATTGGCAATTCGGTCAAACTTTCATCGGAAAAAACTTCCGAGTCTGA 339 0.5516 MGGLVGIYCRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNIAPANWQFGQTFIGKNFRV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02093 112 Gene3D - 18 110 IPR036749 -
Vimu5g02093 112 SUPERFAMILY PHL pollen allergen 15 106 IPR036749 -
Vimu5g02093 112 Pfam Expansin C-terminal domain 19 96 IPR007117 -
Vimu5g02093 112 FunFam Expansin 18 110 - -
Vimu5g02093 112 PANTHER EXPANSIN-A15 7 110 IPR002963 GO:0009664
Vimu5g02093 112 PRINTS Expansin signature 17 29 IPR002963 GO:0009664
Vimu5g02093 112 PRINTS Expansin signature 64 85 IPR002963 GO:0009664
Vimu5g02093 112 PRINTS Expansin signature 29 50 IPR002963 GO:0009664
Vimu5g02093 112 PRINTS Expansin signature 93 109 IPR002963 GO:0009664
Vimu5g02093 112 PRINTS Expansin/Lol pI family signature 93 107 IPR007118 GO:0005576
Vimu5g02093 112 PRINTS Expansin/Lol pI family signature 1 17 IPR007118 GO:0005576
Vimu5g02093 112 PRINTS Expansin/Lol pI family signature 55 69 IPR007118 GO:0005576
Vimu5g02093 112 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 28 107 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02093 Vimu-Chr5 32647734 32648072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02093 8 112 Expansin Gene Family AT2G39700 86.667 1.22e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02093 - - gmx:100809139 214.927