Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02089 ATGAAGTGCTTCTACTTCTCCAACGCAGAGGACGAAGATTGCGTGGCAGCGGCACCGAGTTCGCGCGGTTCCACATCGCGTGTGTCGTGGGCGCGTTCGCTCAGTCTCATGGACACGCGCAGCCGCTCCAACTTCGATTCCGACTCCACGGAATTCTCCGATACGGTGGACTTCCATCACTACCTGGTGCAGCGCCGCGCCAACGACCTCCGCCTCTTCCCATTCTCGGCGCTGAAGTGCGCCACGCGCGGGTTCAACCGCGCCCTCCTGGTTGGCGAGGGGGGGTTTGGGTCCGTGTACCGCGGCGTGGTGGAGGAAAAGGAGGTGGCGATCAAGCAGCTCAACCGTAACGGGCAGCAGGGGCACAAGGAGTGGATCAACGAGGTGAATTTGTTGGGAGTGGTGAAGCATCCTAATCTGGTGCGGTTGGTAGGGTACTGCGCTGAGGACGATGAAAGAGGGATCCAGAGGCTTCTGGTTTACGAGTTTATGCCGAATAAGAGCTTGGAGGAGCATCTCTTGGCACGAGTCCCTTCCACGGTTCTGCCTTGGGGGACCAGGTTGAGAATTGCGCAAGATGCGGCTCGCGGTTTGGCTTATCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACGTCCAACATCCTGCTGGATGAAAACTTCAACGCAAAGCTTTCTGATTTTGGACTGGCTAGGCAAGGACCTTCAGAAGGGTCCGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCAGACTGGTAAGCTAACCGCTAAGAGTGATGTGTGGAGCTTTGGTGTAGTTCTTTACGAGCTTATCACTGGGAGGAGAGCTGTAGAGAGAAACCTACCTAAAAATGAACAGAAGCTTTTAGAGTGGGTTAGATCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACCCTCGACTTAAGGGTCAATACTGCATCAAATCAGCCCATAAACTTGCAATCCTGGCAAACAAATGCCTCACAAAACAGCCGAAGTCTCGCCCAAAAATGAGTGAGGTGGTTGAGTCTCTTGGAATCATTATTATTGAGACAGATACTCGGGATGAAGGCTTTCCCCAAGCTGCTGTAACCGCTAGAGAAGAAAAAGAAGAGAAGGTATCTGTAGAGGAGACTGAACCTGAACCAGCGAAACAAGGGAACAATTACCTGAAGAAGGTTTTTGAATTCAAAGACATGGTCAGCTTAAGAAACAAGTCTATTGGAAGGTTGGATTGGAAAAGTTGGGCGCCTGGGCTAGTAAGAAGCTGGTGA 1320 0.5068 MKCFYFSNAEDEDCVAAAPSSRGSTSRVSWARSLSLMDTRSRSNFDSDSTEFSDTVDFHHYLVQRRANDLRLFPFSALKCATRGFNRALLVGEGGFGSVYRGVVEEKEVAIKQLNRNGQQGHKEWINEVNLLGVVKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEEHLLARVPSTVLPWGTRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDENFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVQTGKLTAKSDVWSFGVVLYELITGRRAVERNLPKNEQKLLEWVRSYVSDPRKFHHIVDPRLKGQYCIKSAHKLAILANKCLTKQPKSRPKMSEVVESLGIIIIETDTRDEGFPQAAVTAREEKEEKVSVEETEPEPAKQGNNYLKKVFEFKDMVSLRNKSIGRLDWKSWAPGLVRSW 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02089 439 Pfam Protein kinase domain 90 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02089 439 Gene3D Transferase(Phosphotransferase) domain 1 164 381 - -
Vimu5g02089 439 PANTHER OS01G0588500 PROTEIN-RELATED 50 361 - -
Vimu5g02089 439 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Vimu5g02089 439 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 164 372 - -
Vimu5g02089 439 Gene3D Phosphorylase Kinase; domain 1 63 163 - -
Vimu5g02089 439 CDD STKc_IRAK 91 363 - -
Vimu5g02089 439 ProSitePatterns Protein kinases ATP-binding region signature. 91 112 IPR017441 GO:0005524
Vimu5g02089 439 ProSiteProfiles Protein kinase domain profile. 85 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02089 439 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 59 163 - -
Vimu5g02089 439 MobiDBLite consensus disorder prediction 381 395 - -
Vimu5g02089 439 MobiDBLite consensus disorder prediction 381 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02089 Vimu-Chr5 32613440 32615715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02089 71 368 Glycoside Hydrolase AT3G07070 49.834 3.55e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu5g02089 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02089 - - gmx:100305425 755.747