Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02087 ATGTATATAATATCAGGGTTAAACTCAGAGAATGTGAGTGCCGATGCCAAAGATCTCAGCAGTCCAAGTAGTAAAATTATAAAAGAACTCAGTAACACAGTTAGTAAGGTCTCAGAGGTTTCGATGCCTCATACTCTTCAGAGTGAGGGTGAGATCTGGCATCCATCCAATCTGAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTGTTAGGAGAGGGTGGTTTGGGATCAGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTCGTTGCTGTGAAAAGACTTAGCCAGGACACTTTCCAAGGTCACGAGGAGTGGTTGGCAAGGCACGGTATCACTCAGGAAGAAAGTCTCAAGGATGAAGTAAACTGTCTAGGCCAGCTTTCTCATCCTCATCTTGTGAAATTAATTGGATATTGCTTTGAAGATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGATGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCACATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCAATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCAGTAGAGTAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTCATGTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGACTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGACATAGATGAAGCTTTTAAGGTAGCTACCCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGCACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCTCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTGGTCGTAGGAAAAGTGCTGATGATTTAACCAAAGGTAGAAGCGTTAAAGCGTCACTTTCGCCTCTCTCACATGACGTTGCAAATACACGTCCTTGA 1251 0.4396 MYIISGLNSENVSADAKDLSSPSSKIIKELSNTVSKVSEVSMPHTLQSEGEIWHPSNLKSFSLTELTAATRNFRKDSVLGEGGLGSVFKGWIDDHSLSATKPGTGIVVAVKRLSQDTFQGHEEWLARHGITQEESLKDEVNCLGQLSHPHLVKLIGYCFEDRDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSDETKVIYKDFKTSNVLLDSHYNAKLADLGLSMEAPTRDKSRVSSRVMGTYGYAAPEYLATGHVSAKSDVFSFGVVLLELLSGRRTVDKNRPSGQHNLVEWAKPYMANKRKLLRVLDNRLEGQYDIDEAFKVATLCLRCLATESKLRPNMHEVVTDLEHLQVPHVHHNRSVNTSRGRRKSADDLTKGRSVKASLSPLSHDVANTRP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02087 416 SUPERFAMILY Protein kinase-like (PK-like) 57 369 IPR011009 -
Vimu5g02087 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vimu5g02087 416 MobiDBLite consensus disorder prediction 374 416 - -
Vimu5g02087 416 PANTHER OS01G0588500 PROTEIN-RELATED 33 371 - -
Vimu5g02087 416 Gene3D Phosphorylase Kinase; domain 1 43 170 - -
Vimu5g02087 416 FunFam Serine/threonine-protein kinase BIK1 40 170 - -
Vimu5g02087 416 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
Vimu5g02087 416 Pfam Protein tyrosine and serine/threonine kinase 76 367 IPR001245 GO:0004672|GO:0006468
Vimu5g02087 416 ProSiteProfiles Protein kinase domain profile. 73 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02087 416 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 171 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02087 Vimu-Chr5 32607238 32609217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02087 59 370 Glycoside Hydrolase AT3G07070 46.203 2.51e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu5g02087 PK_Tyr_Ser-Thr 6.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02087 - - vun:114169806 717.613