Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02085 ATGGGAAACGGCATAGGGAAGTTAACGGTGTGCTTCACCGGACATAACAGTGGGGGACGTCGGAAGCAGGATATATCCATTTTAATAACGGAGCCTCTGGACGAGGGTTTGGGTCACTCTTTCTGCTACGTTAGACCCGACCCGACCCGGATATCGTCATCCAAGGTGCACTCGGAGGAAACAACGACGTTCAGAACAATCTCTGGCGCTTCGGTGAGCGCTAACACATCGACGCCGTTGTCGACGGCGTTCGTGGACTTGTACTCCTACGGTTGCATAGACCGAGCGGCGGCGTTCGAGAGTTCAACGTCGTTTGCGTCGCTTCCTCTGCAACCGATTCCGCGGAACCTGGTGAACTCAGGGCCCTTCTCTGGGAACCTGGGCGGTGGTGGGTTTCCGGGCTCGGGCCCGCTAGAGAGGGGTTTCATGTCGGGCCCCATCGAGCGCGGGTTCATGTCGGGGCCCATCGATCGTGGACTTTTTTCGGGGCCGATGGAGAGGGAGGGAAACGGATCTGATCATTTCCCGAGAAGCTTCTCGCACGGAGGGATGGGTTTAGGGTTGGGGTTAGGTTTGAGAGTGAGAACGAGGAAGGGTCGGTGGATTCGTGTTTTGCAGAGGGCGATTTCGAAGACTCTTTCTCGGGGGCAGAACTCGATAGTGGCCCCGATCAAAGGAGTGGTGGTAAAAGAGCCGGAGTGGATGGTGGCTGCGGCGGAGAAGCATAATGAGAATCTGAGTGTGAATTTGAGCAGTGAGGGGAGTTTGGAGGACGATGATTCTATGGAGAGTCAGAATCTTCAGTGGGCTCAGGGGAAAGCAGGGGAAGATCGTGTCCATGTTGTTGTGTCTGAGGAACACGGCTGGGTTTTCGTGGGGATCTATGATGGTTTCAATGGACCCGATGCCCCTGATTACCTTCTCTCGAATCTCTACACCGCGGTGCACAAGGAGCTGAAAGGGTTGTTGTGGGATGATGGGTCTGCCCAGGAAAATTCGACGCCTAAAGATGAGTTGTTGCGGGATGTCACAGACGTTGCAGATGTTGCAGACGTAGATGCATGCTCTCACTGTGTTGAACATGAAAATAGTAACTGTAATAAGAGTACTAGTAAGAAAGGTAGGAATTCGAGGAACAGGTACAAAGGTGCTGCGAATAAGTGGGAGGAGAATCAACGGAGGTGGAAGTGTGAGTGGGATAGGGAGAGGTTAGAGCTTGATCGGAGATTAAAGGAGCAACTGAATTCAAGCCGATCAGGATGTGGTGGAGCGGCAAGTTCAATTAATCATGCGGATGTTTTGGAAGCTCTTTCTCGGGCTCTGAGGAAGACCGAGGAGTCTTACCTTGATGTTGCGGATAAGATGGTGATGGAGAATCCTGAACTTGCCTTGATGGGTTCTTGTGTTCTTGTGATGTTGATGAAGGGGGAGGATGTTTACGTGATGAATGTGGGGGATAGCCGCGCTGTGCTGGCTCAGAAGGCTGAGCCTGATTATTGGCTCGGCAAAATCAGGCAGGACTTGGAGAGGATCAATGAGGAGACGATGAATGATCTTGAATCTTGGGATGTTGATAACTCCAATTTGGTTCCAAGTCTTAGTGCGATTCAGCTTACTAAAGATCATAGTACAAGTGTTGAAGAAGAAATCCAGAGAATTAAAAAGGAGCACCCGGATGATCCTTGTGCTGTTGTAAATGACCGTGTTAAGGGTTCTCTCAAGGTTACCCGAGCCTTTGGTGCCGGATTTCTCAAACAGCCCAAATGGAACAACGCACTTCTGGAGATGTTTAGAATAGATTACGTGGGAAACTCTCCTTACATCAGCTGCCTACCATATCTAAAGCACCACAGATTAGGTCCAAAGGACAAATTTTTGATTCTATGCTCCGATGGGCTCTATCAGTACTTGTCAAACGAAGAAGCAGTGGCTGAAGTTGAGCATTTCATCACATTGCAACCCGAGGGAGACCCAGCTCAGCATTTGGTCGAAGAAGTGTTATTTCGTGCTGCAAAGAAAGCTGGGTTGGTCTTTCACGAGTTGCTCGAAATTCCACAGGGTGATAGGCGTCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAAGAATATGGAGATCATGTGTATAA 2139 0.4993 MGNGIGKLTVCFTGHNSGGRRKQDISILITEPLDEGLGHSFCYVRPDPTRISSSKVHSEETTTFRTISGASVSANTSTPLSTAFVDLYSYGCIDRAAAFESSTSFASLPLQPIPRNLVNSGPFSGNLGGGGFPGSGPLERGFMSGPIERGFMSGPIDRGLFSGPMEREGNGSDHFPRSFSHGGMGLGLGLGLRVRTRKGRWIRVLQRAISKTLSRGQNSIVAPIKGVVVKEPEWMVAAAEKHNENLSVNLSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTAVHKELKGLLWDDGSAQENSTPKDELLRDVTDVADVADVDACSHCVEHENSNCNKSTSKKGRNSRNRYKGAANKWEENQRRWKCEWDRERLELDRRLKEQLNSSRSGCGGAASSINHADVLEALSRALRKTEESYLDVADKMVMENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEETMNDLESWDVDNSNLVPSLSAIQLTKDHSTSVEEEIQRIKKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYISCLPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVEHFITLQPEGDPAQHLVEEVLFRAAKKAGLVFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02085 712 Pfam Protein phosphatase 2C 424 659 IPR001932 -
Vimu5g02085 712 SMART PP2C_4 260 701 IPR001932 -
Vimu5g02085 712 CDD PP2Cc 426 703 IPR001932 -
Vimu5g02085 712 ProSiteProfiles PPM-type phosphatase domain profile. 259 703 IPR001932 -
Vimu5g02085 712 PANTHER PROTEIN PHOSPHATASE 2C 255 701 IPR015655 GO:0004722|GO:0006470
Vimu5g02085 712 SUPERFAMILY PP2C-like 273 704 IPR036457 -
Vimu5g02085 712 Gene3D - 237 708 IPR036457 -
Vimu5g02085 712 FunFam probable protein phosphatase 2C 4 237 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02085 Vimu-Chr5 32577374 32580144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02085 1 712 PP2C-type Phosphatase Gene Family AT1G07630 67.265 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02085 - - pvu:PHAVU_011G064200g 1298.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02085 5 32577374 32580144 Vimu5g02085 5 32577374 32580144 ECH