Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02082 ATGGCCATGGATGAGTATCAATGTCATGAGAAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGGCACCACTTTGATTCAATGGTGTTTCACCCATTTCAGCAAAGCACAGATATGCTTACTTCATGTTTACCAACCTTCTACTATGATCCCTACACTGTGTAAGTCTTGCTCTTTGATATTCATGTTTTCTGTCAATTTAGCCCCTTTTCTATTTGGGCACTTTGTAGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTCGTGTCTGCTTATAGAATAGAGGAAAGGGAAGAAACCAAGAGGCTTCTAGAGAAGTACTTGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAAGTAGTGTCATTGGTGAAGCTGATCAAGTTCAGACAGGGATTGTGGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAAATCAAAAGGAATTCCAGTAAAGCAAACTTTGCTGCGAAAAATGCTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCATTGTTTTGTATCTTCCCATGCTCAACCTGAGACTACAACGGCAGAGAGTTTGAGTTGTAGATCTCTTCAATATGGTACAACTGAATTGTTCCATTCAGAATGTCTTCAATTAAATTCTGCAAGGGCTGCAAGAAGTACAGTTCCAAATGTAATCATTGAAGCAGAAACCGCTTTTTCATCCAAATCATCCAGTTGTAGTAGTCATTGTTCTCCCCAACATTCAGAGTTTGAGGAAGAAACAATAGATAGTCAACTTATTGAAGCCAAAGCAGAAGCTAATGCTGCAACAGATGTGGAGCTGTTGGAGTGCAGAAGGCTGGAATTCATAGCCATTGAGGCCATTAGTAAGGTGAACTTATTTGAATCTGCCCATGCACATGAAGTAAAGCTCAGAAAAGAGGTTGAAGATGCAGTGAGAGCTACAATAAAGGAGCAACGGATGTTGTTGGAGGAGAAAGAAAAAATTGCTAGTGAACTGGAAAGGACCACGGGAAGTATTTCCTTTCTAGGAAATTGTGCACACGAAATCAACAGTAAGCGTGATGAAGCTGCAAATGAACTATCACTAATTCAAGCATCCTTCTCAAGCCTGCAGCATGAAAAGCAGGAAATCAGGCGACAGAAAATGGAGGCTCTACATTGGCTTGAACGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCGATGGGATCATTGGGTTTTCTGAAGAATTTCCAGAGCTGGCAGAATTTCCATTATCAGATCTTCAAAACGCTACGTGCAATTTTTCTGAGAGCTTCAAAGCCATGGAGGGTGGATATGGTTCTATTTACAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCGATAGAGTTTCAGCAAGAGGTTCGAATTCTTGGTAGTCTCCATCACCCTAATCTAGTTACTTTGCTTGGTGTATGCCCTGAAGCCTGGTCATTTGTGTATGAGTTCTATCCCAATGGAACTCTTCAAGATTACCTATTCCGAAAGGGAAGTCTTCTCCCTATGACATGGAGTATCCGAGCACGATGGATTTTTGAAATTGCTAGAGCTCTCTGCTTCCTACATTCTTCAAGACCTGAAACTATTGTCCATGGTGGTCTGACACTTGAAACTGTCCTTCTTGACACTGCACTTGGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTAGTGAAAGAGGAGTCACTTTCTCTTCCTAGTTTTCACTTGAGCACCGAGCCAAAGGGTTCTTTTTCATATACAGATCCCGAGCTTCAGAGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCCTTTGGACTCATCATTCTGCAACTTCTCACTGGTAGGACTCCAGTTGGATTAGCTGGTGAAGTACGCAGAGCAGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCTCCGTGGCAACACAATTGGCTGAACTTGGATTGCAATGCTGCCAACTGAACAGCAGAGACCGACCAGAGTTAACACCTTCTCTAGTGAGGGAGTTGAAGCAGTTGTATGTTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAAGGAAGGCCATAAGTGAATGGCTGGATAATGGGCACGAAACTTCACCCATGACTAATTTAAAGTTGAGTTACCTCCATCTCACTCCCAATCATGCGCTTCGACTTGCTATTCAAGGCTGGCTTTGCAAATCTTGA 2394 0.4227 MAMDEYQCHEKVHVAVGKSLKKGTTLIQWCFTHFSKAQICLLHVYQPSTMIPTLCKSCSLIFMFSVNLAPFLFGHFVGKLPASQASPEVVSAYRIEEREETKRLLEKYLSLCRAAKVKVSSVIGEADQVQTGIVDLVTVHNIRKLVIGAITPENCMKIKRNSSKANFAAKNAPPFCEIWFVYKGKHIWTREASETHCFVSSHAQPETTTAESLSCRSLQYGTTELFHSECLQLNSARAARSTVPNVIIEAETAFSSKSSSCSSHCSPQHSEFEEETIDSQLIEAKAEANAATDVELLECRRLEFIAIEAISKVNLFESAHAHEVKLRKEVEDAVRATIKEQRMLLEEKEKIASELERTTGSISFLGNCAHEINSKRDEAANELSLIQASFSSLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCDGIIGFSEEFPELAEFPLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSIEFQQEVRILGSLHHPNLVTLLGVCPEAWSFVYEFYPNGTLQDYLFRKGSLLPMTWSIRARWIFEIARALCFLHSSRPETIVHGGLTLETVLLDTALGCKICEFGFSRLVKEESLSLPSFHLSTEPKGSFSYTDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAVSCGKLSSILDSSAGEWNSSVATQLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYERKAISEWLDNGHETSPMTNLKLSYLHLTPNHALRLAIQGWLCKS 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02082 797 Coils Coil 338 358 - -
Vimu5g02082 797 Gene3D Transferase(Phosphotransferase) domain 1 526 726 - -
Vimu5g02082 797 ProSiteProfiles U-box domain profile. 726 797 IPR003613 GO:0004842|GO:0016567
Vimu5g02082 797 PANTHER OS02G0152300 PROTEIN 12 791 - -
Vimu5g02082 797 Pfam Protein tyrosine and serine/threonine kinase 461 709 IPR001245 GO:0004672|GO:0006468
Vimu5g02082 797 Gene3D Phosphorylase Kinase; domain 1 430 525 - -
Vimu5g02082 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 727 797 IPR013083 -
Vimu5g02082 797 SMART Ubox_2 730 793 IPR003613 GO:0004842|GO:0016567
Vimu5g02082 797 Pfam U-box domain 727 796 IPR003613 GO:0004842|GO:0016567
Vimu5g02082 797 SUPERFAMILY RING/U-box 724 796 - -
Vimu5g02082 797 CDD RING-Ubox_WDSUB1-like 728 783 - -
Vimu5g02082 797 ProSiteProfiles Protein kinase domain profile. 453 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02082 797 SUPERFAMILY Protein kinase-like (PK-like) 437 710 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02082 Vimu-Chr5 32566703 32570942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02082 10 794 U-box Gene Family AT2G45910 34.379 4.41e-149 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu5g02082 PK_Tyr_Ser-Thr 3.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02082 - - gmx:100799032 1275.38