Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02081 ATGGCAGATGGTGAGGATATTCAGCCACTCGTCTGCGATAATGGAACAGGAATGGTCAAAGCTGGATTTGCCGGGGATGATGCTCCAAGGGCTGTGTTTCCCAGCATCGTTGGTCGTCCCCGTCACACTGGAGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGGGATGAAGCTCAGTCCAAGAGAGGTATATTAACCCTGAAATATCCCATTGAGCACGGTATTGTGAATAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTTGCTCCCGAGGAGCACCCAGTTCTGCTCACCGAAGCACCTCTCAACCCAAAAGCTAACCGTGAAAAAATGACCCAAATTATGTTTGAGACCTTCAATACCCCTGCCATGTATGTTGCCATCCAGGCTGTTCTGTCCTTGTATGCCAGTGGCCGTACAACTGGTATCGTTCTGGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTATGAGGGCTACGCTCTTCCTCATGCCATCCTCCGTCTTGACTTGGCAGGACGCGATCTCACTGATGCATTGATGAAGATCCTTACAGAACGTGGCTATTCATTCACTACCACAGCTGAGCGAGAAATTGTAAGGGATGTAAAGGAAAAGCTGGCTTATATTGCCCTTGATTATGAGCAAGAGCTTGAAGCATCAAAAACTAGCTCCTCTGTTGAGAAGAGCTATGAGTTGCCCGATGGACAGATTATCACCATTGGCGCTGAGCGTTTCCGGTGCCCTGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGCATTCATGAGACCACTTACAATTCAATCATGAAGTGTGATGTTGACATTAGGAAGGACTTGTATGGCAACATCGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCTCAGCTTTGGCCCCTAGTAGCATGAAGATTAAGGTTGTTGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTACGATGAGGCTGGTCCATCAATTGTACACAGGAAATGCTTCTAG 1134 0.4788 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELEASKTSSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02081 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vimu5g02081 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Vimu5g02081 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vimu5g02081 377 FunFam Actin, muscle 182 273 - -
Vimu5g02081 377 PANTHER ACTIN 9 370 IPR004000 -
Vimu5g02081 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Vimu5g02081 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Vimu5g02081 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Vimu5g02081 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vimu5g02081 377 Gene3D - 140 340 - -
Vimu5g02081 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Vimu5g02081 377 PRINTS Actin signature 51 62 IPR004000 -
Vimu5g02081 377 PRINTS Actin signature 63 85 IPR004000 -
Vimu5g02081 377 PRINTS Actin signature 142 161 IPR004000 -
Vimu5g02081 377 PRINTS Actin signature 238 254 IPR004000 -
Vimu5g02081 377 PRINTS Actin signature 28 37 IPR004000 -
Vimu5g02081 377 PRINTS Actin signature 117 130 IPR004000 -
Vimu5g02081 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Vimu5g02081 377 Gene3D - 10 371 - -
Vimu5g02081 377 Pfam Actin 5 377 IPR004000 -
Vimu5g02081 377 SMART actin_3 7 377 IPR004000 -
Vimu5g02081 377 FunFam Actin, alpha skeletal muscle 256 330 - -
Vimu5g02081 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02081 Vimu-Chr5 32563612 32565637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02081 1 377 Miscellaneous Gene Families AT3G53750 96.286 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02081 K10355 - gmx:100811630 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00516 4 3737890 3740840 Vimu5g02081 5 32563612 32565637 PCT