Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02078 ATGATTATTATTATTGATTGTGAAGTAATTTTTGACCAATTAGAGATTGACACTTTCAAGGGCGACACATTGCTGGGTAAAGGTGGGTTTGGTAAAGTCTACAAGGGTTGGTTGAATGAGAAGAACCTTACCCCTTCTGGAACAATTTTCCATCTTCCACAACCTTGTGCCGCCATTCTATTCAAAACCTTGGCGGCGAACCTGCGAGACCCATGCCCTAGAAATTTCGCTTTCTCGCCTAACTCTGGGGTCAACGAGCCCACTGTTACCGCACTTTCATATGGGATGAACAACAAGGAGGGTCTCATTGCAGTTTTTGATCTTGGAGGTGGAACTTTTGACGTGTCCATCTTAGAGATTTCTAACGGTGTTTTTGAGGTGAAAGCAAAAAATGGTGACACCTTCTTGGGAGGAGAGGATTTTAATAATGCTTTATTGGACTTTCTAGTGCACGAATTCAAAAAATCTGAGAGTATTGACCTTTCAAAGGATAGGCTTGCCTTGCAGAGGCTTCAGGAAGCTGCTGAGAAAGTAAAAATAGAGCTGAAGGACTGTTATTCAAGGTGGTATCTTACAGGAGATGATAAAGAGCTATTACTCCTCAAAGTGACTTCGTTTTCTCTGGGTATTGAGACTCTGGGTGAAAAAAAGAATATTGTGCCCTTGGCTTTGCCCCCTTTGAGTGATGCGAGTCTTAGAACCCCACCTGCACTGGCACATACTGAACCACAACTCAGAGTCCTAGATGTCAGGGTGGCGATTTTCGATGGGGCGAGGAAGGAGAGGATGCACACCTCACGTTAA 804 0.4391 MIIIIDCEVIFDQLEIDTFKGDTLLGKGGFGKVYKGWLNEKNLTPSGTIFHLPQPCAAILFKTLAANLRDPCPRNFAFSPNSGVNEPTVTALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKAKNGDTFLGGEDFNNALLDFLVHEFKKSESIDLSKDRLALQRLQEAAEKVKIELKDCYSRWYLTGDDKELLLLKVTSFSLGIETLGEKKNIVPLALPPLSDASLRTPPALAHTEPQLRVLDVRVAIFDGARKERMHTSR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02078 267 Coils Coil 161 188 - -
Vimu5g02078 267 Pfam Hsp70 protein 84 184 IPR013126 GO:0005524|GO:0140662
Vimu5g02078 267 SUPERFAMILY Actin-like ATPase domain 98 186 IPR043129 -
Vimu5g02078 267 PANTHER HEAT SHOCK PROTEIN 70KDA 84 183 IPR013126 GO:0005524|GO:0140662
Vimu5g02078 267 ProSitePatterns Heat shock hsp70 proteins family signature 2. 105 118 IPR018181 -
Vimu5g02078 267 FunFam Molecular chaperone DnaK 138 187 - -
Vimu5g02078 267 FunFam Chaperone protein HscA homolog 98 161 - -
Vimu5g02078 267 Gene3D Phosphorylase Kinase; domain 1 7 52 - -
Vimu5g02078 267 Gene3D - 99 136 - -
Vimu5g02078 267 Gene3D - 84 98 - -
Vimu5g02078 267 Gene3D Actin; Chain A, domain 4 137 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02078 Vimu-Chr5 32535390 32538897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02078 84 179 Calmodulin-binding Proteins AT1G56410 50.495 2.46e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02078 K04043 - qsa:O6P43_012455 178.333