Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02077 ATGTTGGGAGTCGTTACCGTAGAAGGCACGCTTGCTCGTCTTGGTGGTTGTGCGATGGAGGAGGCACTATTGTTTGCGGTGGTCTCTATGTTATGGTCTTTTGGTGATGGTTGTTGCATGATGTGGTTCATTCATCTATGCGTGAGGATAGAGGTGCGAAATGAATTTGTGGTTTGGGGCTTAGGATGTAGGTTGAACACTGGTGACGCGCTTGCGTGTAAAGTGTCTGAGAAATTCGTGTCGTTGACGAGGGACTATGAGCTGCGACTTCGATCTCCGGCAATCGGCGAGGGTTTTCAACTAAACGGCGCCGTAGAGTGGGATCTGCGATTACAGGCCATGGAGGGGGAAAACGCGAGCAAGGTGATTGAGTTGGTGAACGAGATAGCGAGTATCTCCGATTACAGGCCTCCGGTGAAGAAGCAGTACTGCAACTTGGCGCGGAGGTTGAAGCTGTTGATCCCGATGTTCGAGGAGATTAGGGACATGAAAGACCAGATCCCCGAGGACACTTCCAAAGCCGTCCTCGCCTTCAAGGAAGCTCTCGAATCCGCCAGGGAACTTCTCAGATTTGGAAGCGAAGGCAGCAAGCTCTACTTGGTCCTTGAGCGGGATGACATTATGAATAAATTCTACGACGTGACAGCTCGGTTGGAACAATCGTTGGGTGGTATTTCGTATGATAAACTTGATATCTCAGATGAAGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCTAAAGGGAGGGTTGACGAACCAGATGTTAGGTTGTATGAGGATATGTTGTTCCTCTACGACAACAGCAGTGATGCAGCTACAGATCCATCTGTTCTAAGTCGATTGGCTGAAAAATTGCAACTGATGGGAATAGCTGATCTTACGCAAGAATCGCTAGCTTTGCATGAGATGGTGGTATCAAGTGGTGGGGATCCTGGGGCACGCATCGAGAAAATAGCAATGTTACTGAAGAAGATAAAGGATTACGTGCAAACAGAAAATCTAGTTAAGGATGATAATTTAGGAGGAAAAGGCATTTTTGCAAAAGTCTATGGAGTCAGTACAAATGAAAAGAGTCATCAGGCCCCTGTTATTCCTGATGATTTTCGATGTCCCATTTCCCTCGAATTAATGAAGGATCCTGTGATTGTTTCAACCGGACAGACTTACGAGCGTTCTTTTATTGAGAAATGGTTGCAAGAAGGGCATGGGACATGCCCCAAAACACAGCAGACTCTCACTAGCACCGTTCTCACACCCAACTATGTCTTACGAAGTCTCATAGCACAATGGTGTGAAGCCAATGGCATGGAGCCACCAAAACGACCCAGTAGCAGTTCACAACCTAGTAAATCAGCATCAGCCTACTCACCAGCTGAGCGAAGTAAGATCGACGGTCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTTGCCATTGCTGAAGCTGGTGCAATACCTCTCCTCGTTGGTCTGTTGTCCGTGCCTGACTCCCGCACTCAAGAACATGCTGTGACAGCGCTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATCGTCTCTTCAGGGGCAGTTCCAGGTATAGTTCACGTGCTGAAGAAGGGAAGCATGGAAGCACGGGAAAATGCTGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAACAAGGTTACAATTGGATCTTCAGGAGCCATACCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCCGCGACAGCACTCTTCAATTTGTGCATTTACCAGGGCAACAAGGGGAAGGCAGTGCGGGCTGGCGTTATTCCGACACTGATGCGACTGCTGACTGAACCTAGTGGGGGAATGGTAGATGAAGCATTAGCTATTTTGGCGATACTGGCTAGCCATCCTGATGGGAAGGCTACGATTAGAGCTTCAGAGGCAGTGCCAGTTTTAGTAGAGTTCATTGGGAATGGTTCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTTCATCTCTGTTCTGGAGATCAACAATATCTGGCACAGGCCCAAGAGCTGGGGGTGATGGGTCCACTGTTGGAGTTGGCTCAAAATGGTACAGATAGAGGCAAAAGAAAGGCTTTACAGTTACTAGAGCGTATGGGAAGGTTACTGGAGCAACAACAGGAAGTTCCAACACAAACTGAAACTCAAGCTCAGAACGAGGAAACCCAACCTCCTTTGATTACTAACCCCGATGATTCCTAA 2313 0.4769 MLGVVTVEGTLARLGGCAMEEALLFAVVSMLWSFGDGCCMMWFIHLCVRIEVRNEFVVWGLGCRLNTGDALACKVSEKFVSLTRDYELRLRSPAIGEGFQLNGAVEWDLRLQAMEGENASKVIELVNEIASISDYRPPVKKQYCNLARRLKLLIPMFEEIRDMKDQIPEDTSKAVLAFKEALESARELLRFGSEGSKLYLVLERDDIMNKFYDVTARLEQSLGGISYDKLDISDEVELVLAQFRRAKGRVDEPDVRLYEDMLFLYDNSSDAATDPSVLSRLAEKLQLMGIADLTQESLALHEMVVSSGGDPGARIEKIAMLLKKIKDYVQTENLVKDDNLGGKGIFAKVYGVSTNEKSHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSFIEKWLQEGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSSQPSKSASAYSPAERSKIDGLLQKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPDGKATIRASEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGVMGPLLELAQNGTDRGKRKALQLLERMGRLLEQQQEVPTQTETQAQNEETQPPLITNPDDS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02077 770 SUPERFAMILY ARM repeat 463 736 IPR016024 -
Vimu5g02077 770 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 626 668 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 656 696 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 492 532 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 698 738 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 533 573 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 574 614 IPR000225 GO:0005515
Vimu5g02077 770 SMART arm_5 615 655 IPR000225 GO:0005515
Vimu5g02077 770 Pfam Neurochondrin 627 749 IPR008709 -
Vimu5g02077 770 SMART Ubox_2 367 430 IPR003613 GO:0004842|GO:0016567
Vimu5g02077 770 FunFam RING-type E3 ubiquitin transferase 115 228 - -
Vimu5g02077 770 Gene3D - 444 762 IPR011989 -
Vimu5g02077 770 Pfam U-box domain 364 434 IPR003613 GO:0004842|GO:0016567
Vimu5g02077 770 MobiDBLite consensus disorder prediction 743 770 - -
Vimu5g02077 770 FunFam RING-type E3 ubiquitin transferase 639 757 - -
Vimu5g02077 770 MobiDBLite consensus disorder prediction 434 459 - -
Vimu5g02077 770 Pfam Armadillo/beta-catenin-like repeat 492 531 IPR000225 GO:0005515
Vimu5g02077 770 Pfam Armadillo/beta-catenin-like repeat 575 613 IPR000225 GO:0005515
Vimu5g02077 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 437 IPR013083 -
Vimu5g02077 770 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515
Vimu5g02077 770 SUPERFAMILY RING/U-box 353 440 - -
Vimu5g02077 770 ProSiteProfiles U-box domain profile. 363 437 IPR003613 GO:0004842|GO:0016567
Vimu5g02077 770 CDD MLKL_NTD 120 222 - -
Vimu5g02077 770 CDD RING-Ubox_PUB 365 417 IPR045210 -
Vimu5g02077 770 Gene3D - 114 227 IPR036537 GO:0007166
Vimu5g02077 770 PANTHER U BOX DOMAIN-CONTAINING 138 738 - -
Vimu5g02077 770 FunFam RING-type E3 ubiquitin transferase 448 599 - -
Vimu5g02077 770 MobiDBLite consensus disorder prediction 439 456 - -
Vimu5g02077 770 FunFam RING-type E3 ubiquitin transferase 363 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02077 Vimu-Chr5 32522398 32531953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02077 114 770 U-box Gene Family AT3G46510 68.966 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02077 - - gmx:100812160 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02077 5 32522398 32531953 Vimu5g02077 5 32522398 32531953 ECH