Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02076 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGCAAACCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCAACCAACACTAAATTTTGCTATTTCAACAACTACAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGCAGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGCTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTCCCCTTCATGGCATCACTCCAGAACCTCAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGCTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTGCTTCAGCTGGTTCATACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCAACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCTGCTAGTCATCTCTTGTAA 924 0.474 MVFSSIPVFVDPPNWHQQTNHPQANGSDNTQLLPPLPPQQTHVGASVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSGALPSAGNTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSAGGGMDQWRLQQIPFFNGFESASAGSYHFQNESIETPSGLVGDLATNSRVSQMPSVKMEESGALNLSRSPLNVSENNHYYSWTDMSGLSSSSASHLL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02076 307 MobiDBLite consensus disorder prediction 13 43 - -
Vimu5g02076 307 MobiDBLite consensus disorder prediction 115 164 - -
Vimu5g02076 307 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Vimu5g02076 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 230 IPR045174 GO:0003700|GO:0006355
Vimu5g02076 307 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Vimu5g02076 307 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Vimu5g02076 307 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02076 Vimu-Chr5 32513647 32515236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02076 37 306 C2C2-Dof Transcription Factor Family AT3G55370 43.333 3.69e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu5g02076 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02076 - - gmx:100816635 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00520 4 3783668 3784753 Vimu5g02076 5 32513647 32515236 PCT