Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02075 ATGGAGAGTGGAAATGAACAAGAGTTGGAGATGGGAGGGTCTAATGGGGTTGCAGCCAGTTCACGGTGGAACCCTACAAAAGAGCAAATAACCATGCTAGAGAACCTCTATAAGCAGGGAATAAAGACTCCCAGTGCTGAGGAGATACAGCAGATAACTGCTAGGCTTAGGGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGCGACAGAAGCAGAAGCAAGAAACTATCGCTTACTTCAATCGCTTTCTTCATACTCCTCAGCCTTTTTTTTCTCCGCCAATTTGCCCAAACGGTTCGTTCATTCATTCATTCATTCCTTTCTCATCATTCATCATTCTATTCAATCAATCATGTAAACTATACACATTCATTTTTCATCTTTATATCTTCACTCATCTTTCTTGCCTTCTGCTTTTCATTCATTAA 459 0.4096 MESGNEQELEMGGSNGVAASSRWNPTKEQITMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHTPQPFFSPPICPNGSFIHSFIPFSSFIILFNQSCKLYTFIFHLYIFTHLSCLLLFIH 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02075 152 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g02075 152 Gene3D - 20 88 - -
Vimu5g02075 152 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 91 IPR044555 GO:0003700|GO:0099402
Vimu5g02075 152 FunFam WUSCHEL-related homeobox 4 20 87 - -
Vimu5g02075 152 SUPERFAMILY Homeodomain-like 21 88 IPR009057 -
Vimu5g02075 152 CDD homeodomain 22 82 IPR001356 GO:0003677
Vimu5g02075 152 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
Vimu5g02075 152 Pfam Homeodomain 20 80 IPR001356 GO:0003677
Vimu5g02075 152 SMART HOX_1 18 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02075 Vimu-Chr5 32497352 32497810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02075 16 133 Wox Gene Family AT5G59340 66.102 1.12e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu5g02075 Homeodomain 1.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02075 - - pvu:PHAVU_011G064900g 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02075 5 32497352 32497810 Vimu5g02075 5 32497352 32497810 ECH