Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02073 ATGGCGAATACACTCATTTCGTCTCCTTCGTTCCTCGGCACGCCTCTTCCCTCGCTCCAACGCCACCACCGCACCACTACCAGGCTTGTCGCCACCAAGGTCCACGTCAGCCTCCACCAAATCCCCCCTCTCCACTCCATAAGCCACTCCATCGACTTCGTCGGTATCGCCACCAGAGCTGAAGGCCTTCTTTACACTCTCGCTGACGCTGCGGTTGCGGCGGACCCGGCTGCTCCCGCCACTGATGCTGCCGTGCAGAAGAACGGAGGCTGGTTCGGCTTCATCTCCGAAGCCATGGAGGCTGTTCTCAAGGTGTTGAAGGATGGCCTTTCTGCTGTGCATGTGCCTTATACATATGGATTTGCTATCATATTACTCACTGTTATAGTTAAGGCTGCAACACTTCCCTTGACAAAGCAACAGGTTGAATCTACATTGGCTATGCAAAATCTTCAACCAAAAATTAAGGCTATTCAAGAAAGATATGCTGGCAATCAGGAAAGAATACAACTTGAGACATCAAGGCTATATCGGCAGGCTGGGGTTAATCCATTGGCAGGTTGTTTACCTACTTTGGCCACAATTCCAGTCTGGATTGGTCTCTACCAAGCATTGTCAAATGTGGCAAATGAGGGACTATTAACCGAGGGTTTCTTTTGGATACCTTCTTTGGCTGGTCCTACTACCATTGCTGCTAGGCAAAGTGGAGCTGGAATTTCTTGGCTTTTTCCATTTGTGGATGGGCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCCATTCTTCTTATTGTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTGAGACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTCCCATCAGGATTAACAATTTACTGGTTTATAAACAATGTCCTGAGCACAGCTCAACAAGTATGGTTGCGCAAATTGGGGGGTGCAAAGCCTGTTGTGAATGAAAATGCCAGTGGGATTATTACTGCAGGACGAGCTAAAAGATCTGACTTGCAGCCGGCAAAAGGCGGTGAAAGGTTTAAGCAGTTAAAAGAAGAGGAAAAGAAGAAAAAGTTAAGCAAGGCACTGCCTGTGGAAGATGTTCAGCCTCTGGCATCTGTTTCTGCTTCTGATGATGGCTCGGACATAGATAGTGATGGCAAGGTATTTCGCTTGTGGAGTTTATTATCATGA 1254 0.4641 MANTLISSPSFLGTPLPSLQRHHRTTTRLVATKVHVSLHQIPPLHSISHSIDFVGIATRAEGLLYTLADAAVAADPAAPATDAAVQKNGGWFGFISEAMEAVLKVLKDGLSAVHVPYTYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLAGPTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLIVSQYVSMEIMKPPETDPSQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENASGIITAGRAKRSDLQPAKGGERFKQLKEEEKKKKLSKALPVEDVQPLASVSASDDGSDIDSDGKVFRLWSLLS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02073 417 CDD 5TM_YidC_Alb3 120 332 IPR047196 -
Vimu5g02073 417 Pfam 60Kd inner membrane protein 119 332 IPR028055 -
Vimu5g02073 417 PANTHER OXA1 68 377 IPR001708 GO:0016020|GO:0032977
Vimu5g02073 417 NCBIfam membrane protein insertase YidC 118 331 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02073 Vimu-Chr5 32480826 32485143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02073 21 388 Chloroplast and Mitochondria Gene Families AT2G28800 68.919 2.49e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02073 K03217 - gmx:100813782 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02073 5 32480826 32485143 Vimu5g02073 5 32480826 32485143 ECH