Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02061 ATGCAATTAACGAAAGCCAACCCTCTTCTTTTCCCCTTATCTAGATTTCTGTGCGCGCGTCATCATTCATCAGTCAACTTGTTTGTCGCAGGACTTTCCTGGGATACCAATGAATCAATTCTGAGAGATGCCTTTGAGAAACATGGTGAAATCATTGAAGTTAGAGTAATATGTGATCATGTGACTGCGAAATCAAGAGGTTATGGATTTGTGCGGTTTTTTTCTGAAACTGCAGCTGCAACAGCTCGCAAAGAGATGAATGGCCAGATACTGGATGGCAGACGCATTCGGGTTACTTATGCACACAAAGGCTAG 315 0.4286 MQLTKANPLLFPLSRFLCARHHSSVNLFVAGLSWDTNESILRDAFEKHGEIIEVRVICDHVTAKSRGYGFVRFFSETAAATARKEMNGQILDGRRIRVTYAHKG 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02061 104 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 103 - -
Vimu5g02061 104 SUPERFAMILY RNA-binding domain, RBD 22 103 IPR035979 GO:0003676
Vimu5g02061 104 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vimu5g02061 104 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 13 104 - -
Vimu5g02061 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Vimu5g02061 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vimu5g02061 104 Gene3D - 16 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02061 Vimu-Chr5 32400191 32400891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02061 20 98 Eukaryotic Initiation Factors Gene Family AT4G34110 30.380 1.17e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02061 K13195 - gmx:100306540 164.466