Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02056 ATGAGAAGGGGTCCATGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTCACATCCCAAGAAGAACACCTTGTCATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGTCGAACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCATCACCATCCTCCTCCTCATCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCTCATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTACGACACAGGTGGATATGGATATGGACATGATGATGTAATGGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATGATAATAATAATAACATTCAGCAAGAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATGGGAGTACAATTCTTCTCACCCCTTATGGGTGATGGATGAAGAAGAGAGTAACAAGATGTTGTTTCCTGCATCAAGTGACCAATACTATTATTCCTGCTATGAACAGGGGAATGCATTTCTAACTGGCTAA 774 0.4225 MRRGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTSQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTFMRKKKALEKKRASPSSSSSSSSLSSINHAVDSHASKEVGEESFYDTGGYGYGHDDVMGLISAGEEFSLDDIWKDIVLSEDDNNNNIQQEPLYELQSQEGCNFSSPPAMIYSPSSWEYNSSHPLWVMDEEESNKMLFPASSDQYYYSCYEQGNAFLTG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02056 257 SMART sant 55 103 IPR001005 -
Vimu5g02056 257 SMART sant 2 52 IPR001005 -
Vimu5g02056 257 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vimu5g02056 257 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vimu5g02056 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Vimu5g02056 257 CDD SANT 60 101 IPR001005 -
Vimu5g02056 257 FunFam Myb transcription factor 3 55 - -
Vimu5g02056 257 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Vimu5g02056 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 132 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu5g02056 257 MobiDBLite consensus disorder prediction 107 138 - -
Vimu5g02056 257 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vimu5g02056 257 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Vimu5g02056 257 Gene3D - 59 102 - -
Vimu5g02056 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Vimu5g02056 257 FunFam MYB-related transcription factor 59 105 - -
Vimu5g02056 257 CDD SANT 5 50 IPR001005 -
Vimu5g02056 257 Gene3D - 3 55 - -
Vimu5g02056 257 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02056 Vimu-Chr5 32365667 32366705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02056 2 255 MYB Transcription Factor Family AT5G59780 50.787 4.64e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g02056 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02056 K09422 - gmx:100776886 371.318