Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02053 ATGGCTCCTGAGTATGCCATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAATTGTGGCCTTGGAAATTATAAGTGGGAGGAGCAATATGATTCAACGACATAAAGAAGCATCATTGTATCTTCTTGATTGGGCACACATGCTAAAAGAGAGTGGTAATCTAATGGAGTTAGTTGATGGTAGATTGGGTTTGGAATTCAACAAAAAGGAGGTTATTACAATGATCAATGTGGCTCTTTTATGCACCAATGCAACTGCCTCCCTCAGGCCTACAATGTCCTCAGTGTTAAGCATGCTTGAAGGTAGATCTGTGGTTCAGGAGTTGATTTCAGAGTCAAGTGAGGCATTGGATGAGAAGAAGTTGGAAGTGATGCGACAGCATTACCAAGAGATAGAAGAAAACAATCTAAGTGAGAGTAATAACAATCACAGTCTCTCAGTGGATGACACATTGGCTACTTCATCTATTTCTGCAACAGATCTATATCCTGTAAACATGAATTCTTTATACTGGGAGAAAAGGGGTCGGTCTAAGGTTGCAAAATTTTCCACAGGAGAAAACTACATTCTTGAATCTAGGATGTTTTATTCTGGACGCATCCCTGTTCTCATGTTTTCCTCTTTACTGGTTTTGCCTTCTGCAATGGGAGAACAGGAGTTAAGGCAAAAGCTTATGGATGCCAGATTTGAACTTGAAACCACAAAGCATCTCAAGACAGAACTGTTCAATCGGTTGAAAATGGCTTACCAAGAGAGGGATGAAGCAAGGTGTCAGCTAGCTAAACTGAGGAACCAGTTCTTGCCCTCTAGTTCAAACAATTTGCAAAACGTGTTTGACATGCAAAATAATTTCACCTTCCCTTCTGCTATTAGAGCAAGCTCAGGCATAACAGAATCTGATAATAGTCTCTCACATGGTTCCCCACAAGTGGAATTCTTATTTGACTCTTCTACAGAGGTTACAAACATCAACGCAGTTAACCCATTTGACAAAATGTGTTATCTCAATCAGAATCTGATTCAAGACTTCAATTTTTCAGCACCCCATCTTTCGATGATTCCTTCTATAAAGCCAGTGTGTGATCCTGCTGCTGCAGTTATAGATCGTCTTGCCAATGAAAGAGGTTTGCCTCAAATGGGTCAACTCCTTCAGGCTGTGAAAGATGCTGGTCCATTGCTTAATACTTTGCTCCTTGCAGGACAACTTCCTACATGGGTAAACCCTCCTCCTATTGAAGAGATCAAAGTGCCACCTATAGCCATAAAAAAGTGTGATGTCACTAGCTTCATTAGGCCTAACACTTTTGGAGAAAGTAGAAATTCACTTATAAAACCCAAGATTCCAACTTTGCATCATTCTTCAAATGCTCTCTCCACTTGTTCTGCTTCCATGCTCAACTTCGCTGGTCAAACCACTGGTTCATGGAACAGCACATGGCAGTTGAATTCAAGTTCTGGTGTCACTTCCAAGTCCCGTCAATGA 1494 0.4083 MAPEYAMHGYLTDKADVYSFGIVALEIISGRSNMIQRHKEASLYLLDWAHMLKESGNLMELVDGRLGLEFNKKEVITMINVALLCTNATASLRPTMSSVLSMLEGRSVVQELISESSEALDEKKLEVMRQHYQEIEENNLSESNNNHSLSVDDTLATSSISATDLYPVNMNSLYWEKRGRSKVAKFSTGENYILESRMFYSGRIPVLMFSSLLVLPSAMGEQELRQKLMDARFELETTKHLKTELFNRLKMAYQERDEARCQLAKLRNQFLPSSSNNLQNVFDMQNNFTFPSAIRASSGITESDNSLSHGSPQVEFLFDSSTEVTNINAVNPFDKMCYLNQNLIQDFNFSAPHLSMIPSIKPVCDPAAAVIDRLANERGLPQMGQLLQAVKDAGPLLNTLLLAGQLPTWVNPPPIEEIKVPPIAIKKCDVTSFIRPNTFGESRNSLIKPKIPTLHHSSNALSTCSASMLNFAGQTTGSWNSTWQLNSSSGVTSKSRQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02053 497 Coils Coil 249 269 - -
Vimu5g02053 497 Pfam Protein tyrosine and serine/threonine kinase 1 102 IPR001245 GO:0004672|GO:0006468
Vimu5g02053 497 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 140 - -
Vimu5g02053 497 SUPERFAMILY Protein kinase-like (PK-like) 1 110 IPR011009 -
Vimu5g02053 497 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Vimu5g02053 497 Pfam Protein of unknown function (DUF1635) 222 434 IPR012862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02053 Vimu-Chr5 32338650 32348886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02053 1 143 Receptor kinase-like Gene Family AT1G07650 54.545 4.15e-43 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g02053 DUF1635 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02053 - - pvu:PHAVU_011G067500g 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00548 4 3978100 3979723 Vimu5g02053 5 32338650 32348886 PCT