Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02052 ATTATTATAGTGTGCATTATCTTTCTTACATTGAGTGATTGCTACGGCGTATTAAAGCGTCTGTTGTGTGGAATTTTCCGAGGCAGAAACCAGGTTCCAAGGCGGTTTCTAGATGTGACCGTTCTGGACGATGATCCTTCCCTGCAGGTTCAAAGCAGAGGATTGGAGTTCTGTGTGGTGGAGTCTCTTCCAACGATTGAGTTCAAGAGAAACGAGGGAGAACAAGACAAGGGAAGTAATGTGGAATGTGTCATTTGTCTTGGAGAGTTTGAGGAAGGGGAGAGACTGAAACATCTTCCAGAATGCAGACATAGCTTCCATGTTTCATGCATTGACAAGTGGTTTCAGTCTCATTCAAATTGTCCTCTGTGTAGAGCATTGGTGCATCATCCCATGCTGCACTGTTCCGTAGATGCTTCTCACACATTGCTACAGCCTTTGAGGAGGGAAGACTTTGAAAGGGAAAATCTGCCTAACACACAACAGTTCCTTCCCCCTTGA 501 0.4491 IIIVCIIFLTLSDCYGVLKRLLCGIFRGRNQVPRRFLDVTVLDDDPSLQVQSRGLEFCVVESLPTIEFKRNEGEQDKGSNVECVICLGEFEEGERLKHLPECRHSFHVSCIDKWFQSHSNCPLCRALVHHPMLHCSVDASHTLLQPLRREDFERENLPNTQQFLPP 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02052 166 CDD RING-H2_EL5-like 82 125 - -
Vimu5g02052 166 PANTHER RING-H2 FINGER PROTEIN ATL16 26 140 IPR044600 GO:0016567|GO:0016740
Vimu5g02052 166 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Vimu5g02052 166 Pfam Ring finger domain 82 125 IPR001841 -
Vimu5g02052 166 SMART ring_2 83 124 IPR001841 -
Vimu5g02052 166 FunFam E3 ubiquitin-protein ligase ATL6 43 131 - -
Vimu5g02052 166 SUPERFAMILY RING/U-box 60 132 - -
Vimu5g02052 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02052 Vimu-Chr5 32335682 32337948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02052 45 128 Rapid Response to Elicitors AT3G16720 52.273 7.72e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02052 - - gmx:121172630 243.047