Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02051 ATGGGCCTATCGGAACATGGCCCATTTTCACACACGATAAGGACATTTTGGTCATTTTGTAACATTTCGTATATAAACTTCATAAACCAAAACGTAAACCCTAGAGCCGGGTTTGTTCCTCTGCGCAGGAATTCGGATTATTTGACAGGTAGAATTTTTTCAATGGCTCCCGCTAAAGTTGATAGTTCTAAGAAGGGTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAGGCAGTTAAGTCTGGACCTACCTTTAAGAAGAAGGCGAAGAAGATCCGAACTTCTGTGACTTTCCACAGGCCTAAGACGTTGAAGAAGGAGAGGAACCCGAAATATCCTCGGATTAGTGCACCCCCAAGGAACAAGCTGGATCATTATCAGATCCTGAAGTTCCCTCTTACTACTGAGTCTGCTATGAAGAAAATTGAGGACAACAACACTTTGGTTTTCATCGTCGACCTACGTGCAGACAAGAAAAAGATCAAGGATGCTGTAAAGAAAATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCTTATGTCAGGTTGACCCCGGATTACGATGCATTGGATGTGGCAAACAAGATCGGCATCATCTAA 627 0.4386 MGLSEHGPFSHTIRTFWSFCNISYINFINQNVNPRAGFVPLRRNSDYLTGRIFSMAPAKVDSSKKGDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02051 208 ProSitePatterns Ribosomal protein L23 signature. 186 201 IPR001014 GO:0019843
Vimu5g02051 208 Pfam Ribosomal protein L23, N-terminal domain 69 118 IPR005633 -
Vimu5g02051 208 Hamap 50S ribosomal protein L23 [rplW]. 128 208 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu5g02051 208 PANTHER 60S RIBOSOMAL PROTEIN L23A 61 208 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu5g02051 208 Gene3D - 89 208 IPR012677 -
Vimu5g02051 208 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 125 201 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vimu5g02051 208 FunFam 60S ribosomal protein L23a 88 208 - -
Vimu5g02051 208 Pfam Ribosomal protein L23 128 190 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu5g02051 208 NCBIfam 50S ribosomal protein L23 132 208 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02051 Vimu-Chr5 32334927 32336332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02051 55 208 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 2.89e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02051 K02893 - jre:109021970 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00550 4 3981408 3983513 Vimu5g02051 5 32334927 32336332 PCT