Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02019 TTAGATGTAAACTCAGACACCCTTGTGATCACCTTTGCCCCTTCTGCAAATTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCGGTTCCTGATGGCCTCATTGTTGATAATGGTTTCTCCCTATATCCATCAGGGTCCTACTCTGGCTTGTTGACAAAAGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAAGTGTCTCCTCTGGCAATGACACGCTTCAACGAACTTGGGTTGCTGACGAAAAATTCCTCATACAACCTAACTTGGCCACTAATTTTTCAAACATCGGTGCTGTGAAATATGTAAATGGTGGTCCAACAGCAAATACTGCTCCACCTTCTGTCTATGGTACTCTGACAAGGATGAACTCAGCTGGTGATCCCCGAAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATAGTCAGCAAAGGCCTCAATGAGCTCTACTTTAATGTTTACATTAATTCCTTGTTGGCTGCTAAGGATCTTGATCTGAGTATCGAAAATAATAATGTTTTGGCTACACCATTTTTTAAGGACTTGGTTACAGCCCCATCTGCCAGCACCAAAATGCTTGTAAGCATTGGCCCTTCTACTGTGAACAATAATTATCCTGATGCTATTTTGAATGGGCTGGAGATAATGAAAATGAACAATTCTGCGAGCAGTTTCAGCTCATCAACTGCGCCTGAGACAGGTTCTTCTGGTTCAGGTTCTAAGAAGGTTGGCTTGATAGTAGGCGTGAGTCTCGGGGCATTTTTTGCAGTGGTTATGGTTCTTGTTTTCTTTCTACTATGCAGGAAAAGAAGACGTTTGGAAAAAGAAAAACAAGGGCATTCAAAGACATGGGTTCCCTTATCAATCAATGATGGAACTTCCCACACCATGGGAAGTAAATACTCTACTGGCACATCAGGAAGTGCTGCTTCAAATTTTGGGTATCGTTTCCCTTTTGTGACAGTTCTGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGAATTGGTGGCTTTGGAAAAGTATACAAGGGAGAGTTAAATGACGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTAGCAGAATTCCGAACTGAAATTGAGATGCTGTCACAGTTCCGCCACCGCCATCTGGTATCACTGATTGGATATTGTGATGAAAAGAATGAAATGATTTTGATATATGAATATATGGAAAAGGGAACTCTCAAAAGTCATTTGTATGGTTCAGGTCTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATTTGCATTGGAGCAGCTAGAGGACTG 1365 0.4234 LDVNSDTLVITFAPSANSIAFVNAIEVVSVPDGLIVDNGFSLYPSGSYSGLLTKALETVFRVNMGGPSVSSGNDTLQRTWVADEKFLIQPNLATNFSNIGAVKYVNGGPTANTAPPSVYGTLTRMNSAGDPRSNFNVTWQFDVEPQFQYLVRLHFCDIVSKGLNELYFNVYINSLLAAKDLDLSIENNNVLATPFFKDLVTAPSASTKMLVSIGPSTVNNNYPDAILNGLEIMKMNNSASSFSSSTAPETGSSGSGSKKVGLIVGVSLGAFFAVVMVLVFFLLCRKRRRLEKEKQGHSKTWVPLSINDGTSHTMGSKYSTGTSGSAASNFGYRFPFVTVLEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02019 455 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vimu5g02019 455 Gene3D - 54 237 - -
Vimu5g02019 455 FunFam Receptor-like protein kinase FERONIA 55 237 - -
Vimu5g02019 455 Pfam Protein tyrosine and serine/threonine kinase 351 455 IPR001245 GO:0004672|GO:0006468
Vimu5g02019 455 FunFam receptor-like protein kinase FERONIA 310 421 - -
Vimu5g02019 455 Pfam Malectin-like domain 4 235 IPR024788 -
Vimu5g02019 455 Gene3D Transferase(Phosphotransferase) domain 1 331 455 - -
Vimu5g02019 455 ProSiteProfiles Protein kinase domain profile. 346 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02019 455 PANTHER OS03G0124300 PROTEIN-RELATED 2 294 IPR046957 GO:0004672
Vimu5g02019 455 SUPERFAMILY Protein kinase-like (PK-like) 321 455 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02019 Vimu-Chr5 32106240 32107607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02019 1 455 Receptor kinase-like Gene Family AT3G46290 62.227 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu5g02019 Malectin_like 2.1e-26 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02019 - - gmx:100806488 748.429