Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02016 ATGTACACACACAGCAACGCCTCCCTCCCACGCTCCGCCGAATCCCTCGCCCATTTTCTCTCTCCGCAGGACGCATCCACGCCGTCGCCAATGCAGTACGCCGCCGCTCCTCAGCCGCAGCACCACCAAGTTGCCCTGGGCGAGTTTGATTCAGAGGCGAGTTCGAATAACACGTACAACAGCTGCAGCAGCGGGTGCACCAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTTACGAGAGTCGGCGAGTGCAAAGGAGCGTAAGCAGCCACTCGCTGCAGAAGAACGGTGGTGGGCTCCACCACCCCTTTTCTCCTCTCTTTGCTCAGTTGCTTGATTCCCAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTTCATGGAATGCAATATTATCACCATTCAGATAGTCCATTGTCGAGTGAAAGTAGCTTGATCATAGAAGAAATGAGTAGAACCAGTCCTTATAGCCCAGAAGAGAAGAAAGTGAGGATTGAGAGATATAGGAGCAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCGTGCAGGAAGACATTGGCAGATAGCAGGCCAAGAATCAGAGGGCGATTTGCAAAGAATGAGGAAATTGCAATGAACCCTCCGGTTCAGTGGAGCCACATGGGTACCGGAGAGGAAGAGGACGAGGAAGAAGATAACTGGGCCAATTTCTTTGATTCCATAGTTCCTGCAAATCTTGGTCAGGAGCCTCATGGCAGTAGTTCCTCCTTTGGCGCTTTCTATTAA 789 0.5184 MYTHSNASLPRSAESLAHFLSPQDASTPSPMQYAAAPQPQHHQVALGEFDSEASSNNTYNSCSSGCTSYMGSPSSLASYESRRVQRSVSSHSLQKNGGGLHHPFSPLFAQLLDSQNGPVRRACSTGDLQRFHGMQYYHHSDSPLSSESSLIIEEMSRTSPYSPEEKKVRIERYRSKRNQRNFGKKIKYACRKTLADSRPRIRGRFAKNEEIAMNPPVQWSHMGTGEEEDEEEDNWANFFDSIVPANLGQEPHGSSSSFGAFY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02016 262 MobiDBLite consensus disorder prediction 21 36 - -
Vimu5g02016 262 MobiDBLite consensus disorder prediction 21 40 - -
Vimu5g02016 262 Pfam CCT motif 168 208 IPR010402 GO:0005515
Vimu5g02016 262 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 28 236 IPR045281 GO:0009909
Vimu5g02016 262 MobiDBLite consensus disorder prediction 77 96 - -
Vimu5g02016 262 ProSiteProfiles CCT domain profile. 166 208 IPR010402 GO:0005515
Vimu5g02016 262 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02016 Vimu-Chr5 32087163 32089393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02016 162 211 C2C2-CO-like Transcription Factor Family AT5G15850 50.000 2.45e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g02016 CCT 4.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02016 - - gmx:102667610 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00568 4 4106208 4108125 Vimu5g02016 5 32087163 32089393 PCT