Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02011 ATGAGAGTCAGAAGAATGGAGGCATTTCCCAGAGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCTTCTTACTCCAACGAGAAGCCGGTCAACTCGCCATTGCGCACTCAATCCACGTGGAAGACGTGGATGGAGTCACGCGCCGAGGAGCCAGCGGAGCAGCAGCAACGCGGCAGTCCCGATGAAGTCACAGCTACGTCGTGGATGGCGCTAAAGGACTCCACTCCGCCGCTTCCATCACAGACACTCGCCGCCGTGCTCGGTGAGCCTCTGGCGGAGGTCGGAAATGCCGCGAAGCGCGCCGCGGAATGGGGTCTGGTGCTGAAGACGGACACGGAAACCGGGAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGTGGGGAGGAGCCGAGCTCGAAGGTGACCGGTGGGTCGAGGAGGGACTCGGGAAACTCCGTTCGGAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCAAGGGTTTCGGAGGACCTGAGGGACGCTCTGTCGGCGTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATAATGTATGCCAGTGCCGGGTTTTTCAAGATGACGGGTTACACATCGAAGGAAGTCATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCAGACACTGATCCAGATGATGTGGCAAAGATAAGGGAAGCCTTACAAACTGGTCAGACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGCACTCCCTTTTGGAACCTTCTCACTATTGCCCCAATCAAGGACCACGATGGCAGAGTCCTTAAATTTATAGGTTTTGACTTGCACGTGGCTCTTGAGATAATGGAACGTTGGCATGCATCGTTGTCTGATACAGATACCAGACTCCTGAAGTCTGGTGTTTCACTTTTAGAAGGGAAGAAAAAACGAATTTCAGAGCGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGACGAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATTGTATGCCACGGGCGGTGAGTGAATCAGGAGGCCGTCCCTTGATCAGAAAGTCAGCATCCGGTGATGATGATAAAGAAAAACCAGAAAAGTCATCGAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGCAAATCACATGCAGGAGACACAAGTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGGAAAAGTCAGTCCAACTTTGGAAGCTTCAATGACGAAGCTGTTATTAAGGATAGTTCTGAGAGTAGTGATGAGGATGATGAGAGGTCTGGTAGTTTTGATGGCAAAGTAAAGAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTCGAACGTATTGAGAAGAACTTTGTTATTACTGATCCTAGGCTGCCTGATAACCCCATTCTTACGGAGTATAGCCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACACTCAAACTGACGTCACTGTGCAACTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTGCAGTACTTTATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACTGCAAAAGAGGGAGAACAATTGGTAAAGGAAACTGCTGAAAATGTTGATGATGCATTGAGAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCGAAACCACATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATTGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTATCTGGTGGAGCTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGTATTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAGATCCTCGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACCGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGAGCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCTGCTGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTGTCCCTAACAGATTTTGATCTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCATCAAATGAAAAGAAGAAAGCACAGAAAAGCCAACAACCTCCAATATTTATGGCAGAACCTATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCTGGCCATACTAGTGCTGTGGATTGGTGGGCTCTAGGAATTCTTCTATATGAAATGTTTTATGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTATCGGTTGCTGAACAGAGAGGCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAAAACCATCCATTCTTTCGGGGTGTCAATTGGGCACTAGTTCGTTGCACTAAACCTCCTGAGCTTGATGCACCTCTCTTAGAAACAACTGAAGAAGAAAAGGAAGGCAATTTTGAAGATCAAGTGCAAGAGGAGATGAACGTCTTCTGA 2982 0.4655 MRVRRMEAFPRDQRGSLEVFNPSSSYSNEKPVNSPLRTQSTWKTWMESRAEEPAEQQQRGSPDEVTATSWMALKDSTPPLPSQTLAAVLGEPLAEVGNAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPSSKVTGGSRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKFIGFDLHVALEIMERWHASLSDTDTRLLKSGVSLLEGKKKRISERMQVEVSKHTEGTKEKMLRPNGLPESLIRYDCMPRAVSESGGRPLIRKSASGDDDKEKPEKSSRRKSESVASFRRKSHAGDTSSMERITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDEAVIKDSSESSDEDDERSGSFDGKVKKREKRKGLDLATTLERIEKNFVITDPRLPDNPILTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKETAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLERQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPSNEKKKAQKSQQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNREAKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLLETTEEEKEGNFEDQVQEEMNVF 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02011 993 CDD PAS 195 284 IPR000014 -
Vimu5g02011 993 ProSiteProfiles PAC domain profile. 242 296 IPR000700 -
Vimu5g02011 993 PANTHER FLIPPASE KINASE 1-RELATED 386 973 - -
Vimu5g02011 993 Gene3D PAS domain 182 338 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 46 65 - -
Vimu5g02011 993 Gene3D Phosphorylase Kinase; domain 1 663 747 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 1 38 - -
Vimu5g02011 993 CDD PAS 500 578 IPR000014 -
Vimu5g02011 993 CDD STKc_phototropin_like 663 969 - -
Vimu5g02011 993 Pfam PAS domain 189 279 IPR000014 -
Vimu5g02011 993 Pfam PAS domain 500 578 IPR000014 -
Vimu5g02011 993 SUPERFAMILY PYP-like sensor domain (PAS domain) 189 280 IPR035965 -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 111 165 - -
Vimu5g02011 993 Gene3D PAS domain 461 616 - -
Vimu5g02011 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vimu5g02011 993 ProSiteProfiles PAC domain profile. 537 591 IPR000700 -
Vimu5g02011 993 FunFam Putative LOV domain-containing protein 748 962 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 368 417 - -
Vimu5g02011 993 SUPERFAMILY PYP-like sensor domain (PAS domain) 500 578 IPR035965 -
Vimu5g02011 993 SUPERFAMILY Protein kinase-like (PK-like) 648 970 IPR011009 -
Vimu5g02011 993 SMART pac_2 245 285 IPR001610 -
Vimu5g02011 993 SMART pac_2 540 582 IPR001610 -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 130 152 - -
Vimu5g02011 993 NCBIfam PAS domain S-box protein 503 578 IPR000014 -
Vimu5g02011 993 NCBIfam PAS domain S-box protein 195 280 IPR000014 -
Vimu5g02011 993 ProSiteProfiles PAS repeat profile. 168 239 IPR000014 -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 357 422 - -
Vimu5g02011 993 FunFam LOV domain-containing protein 461 616 - -
Vimu5g02011 993 Coils Coil 595 615 - -
Vimu5g02011 993 FunFam LOV domain-containing protein 663 747 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 450 468 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 17 38 - -
Vimu5g02011 993 ProSitePatterns Protein kinases ATP-binding region signature. 670 693 IPR017441 GO:0005524
Vimu5g02011 993 Pfam Protein kinase domain 667 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02011 993 ProSiteProfiles Protein kinase domain profile. 664 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02011 993 Gene3D Transferase(Phosphotransferase) domain 1 748 962 - -
Vimu5g02011 993 MobiDBLite consensus disorder prediction 439 468 - -
Vimu5g02011 993 SMART serkin_6 664 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02011 Vimu-Chr5 32013389 32024880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02011 9 993 AGC Kinase Gene Family AT3G45780 64.058 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu5g02011 Pkinase 6.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02011 K20715 - gmx:100804524 1661.74