Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02009 ATGATCCAGTGCAGCCACTTCCACGTGCAACCCTTCTCTGATTGGTTGACTCGCAGTCACGGTCTCGAGTTACAGTTTCGTTACGGCGGCGGATACAGAACGCGTGATCACCGTCAATTTCATTTTTGCGACACTTTGGAACGAAAGTCAGTAGTGCGGGGGGTCTCTGTTTTCTTGGTGGAGCTTGGGCAGAGAAAGAACATGGGTTGCTTTTGTTGCGCAGGGAAATCATGCACCAATTCGGACACTGAAGAGTATGGCCAGAATTTCGACCAGAAACCCTCCAACTTCACTGCCGCAGAAAGCGTCAAAGTTGATTTCAAAGTGAATGGGAAAAAGGAAGATGGTTCTAAAGGTGATCAGCTTGCTCTGGACGTGAAGAGTTTAAATTTGAAAGAAGAGGGTTCTCAGGATGAAAGAGATAATGGCAATCGAGCGCAGTCATTCAGTTTTAATGAACTTGAAGCTGCGACGGGAAATTTTACGGCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCTAATGGACTTCAAGGGATTCGAGAATTCGCGGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTAATCTTGTGAAGTTGATTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTAGTTTATGAATTCATGCCATTGGGGTCTTTGGAGAACCACTTGCTTGACGTGGACAAGTTCATGAGTTTGTGGCCATCACTGTGTTCAACTCACATTCCAACTCATTTCTTGGTGGGCTTGAATATACTCCAGCAAGATTGTCTCGACTCGCAATTGCATGGTCTCTCTCTTGATGCCATTGTCTGTGTTGAAGAATCCCTTTTCTTTTGTGTTTTGTCCTGTGTTCTGTGGCCTCAACTTCTGTTACAATCATCTCTTTCTGCCTTTCTCTGTTCAACAATATCTGGGCAGCTAGCAAGACCCTTGTTCAGAGATAGGAAAAAGTTTCCCCAGATGGTTGATCCTTTACTTGAAGGTCGATATCCGGTGAGAGGGTTATACCAAGCTCTTGCCATTGCTGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCTGTCATAGTTGATGTTGTTACAGCTCTAAATTACTTAGCTTCTCAGAAGTATGATCCTCAATTTCATCCGGCACAAAGCTCTAGAAGAAGTCCACCTTCTCAGGTAATGCAAAGGGATGATGATGATCAACGTAGACTTATTTTAAGCACCGAGCATGTGACAGACAGATCATAA 1308 0.4472 MIQCSHFHVQPFSDWLTRSHGLELQFRYGGGYRTRDHRQFHFCDTLERKSVVRGVSVFLVELGQRKNMGCFCCAGKSCTNSDTEEYGQNFDQKPSNFTAAESVKVDFKVNGKKEDGSKGDQLALDVKSLNLKEEGSQDERDNGNRAQSFSFNELEAATGNFTADCFLGEGGFGKVYKGHLERINQVVAIKQLDPNGLQGIREFAVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEFMPLGSLENHLLDVDKFMSLWPSLCSTHIPTHFLVGLNILQQDCLDSQLHGLSLDAIVCVEESLFFCVLSCVLWPQLLLQSSLSAFLCSTISGQLARPLFRDRKKFPQMVDPLLEGRYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPQFHPAQSSRRSPPSQVMQRDDDDQRRLILSTEHVTDRS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02009 435 SUPERFAMILY Protein kinase-like (PK-like) 147 256 IPR011009 -
Vimu5g02009 435 Pfam Protein tyrosine and serine/threonine kinase 166 261 IPR001245 GO:0004672|GO:0006468
Vimu5g02009 435 MobiDBLite consensus disorder prediction 398 435 - -
Vimu5g02009 435 FunFam probable serine/threonine-protein kinase RLCKVII 133 237 - -
Vimu5g02009 435 MobiDBLite consensus disorder prediction 412 435 - -
Vimu5g02009 435 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Vimu5g02009 435 SMART serkin_6 161 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02009 435 ProSiteProfiles Protein kinase domain profile. 161 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02009 435 PANTHER OS07G0668900 PROTEIN 331 398 - -
Vimu5g02009 435 Gene3D Phosphorylase Kinase; domain 1 130 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02009 Vimu-Chr5 31995856 32001035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02009 127 392 Glycoside Hydrolase AT3G07070 37.975 5.13e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu5g02009 PK_Tyr_Ser-Thr 3.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02009 - - csav:115719108 350.517