Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02008 ATGCATGGTGGGAAGCGGGGGTGCCACGTTGACCATGGCAATGTAAGCAACGTAGATGGTGATGAGGAGAGCATGGCTTGGAGACTAGACTGGGTGGTGAGTTCGTGGACTAAATGTCTGGCTCAAGTTGGCAGTCCTCATCCACTTTCACCACCTAAACAATTGGTTGATCCCCCTGATAGCACTTGTGCCCAAGTGATGCAAACGAAGACTGAAAAAGTTAGTAGTAGATGGGTGCATGCAACAGAAAAGGAGTGCCTTGAACTTATTAATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTGGGAATATCTTTGAGTATTCAACGAGAGGATCGACTTGAGGGACTGTCTAGCCATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGATGATGATATGCAGATAGTTAAAGGACAGAGTAATGCCTGTGAAAATGGAGAAATGGAATACAATGGTGGTAAAACCAGGACACAGGAAAATCAGACTATGAATGTTATTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGATTCTCTGGTTTCTCACTAACGAAAGAAAACTCTTGCCCCAAAGAGCATCCATCCCTGGAACTAACTTTGAAAAGGCTGGGAGAAGTAAGAGATCCTAAAAATGTCACGGGTGAAGAATGCAATGTTTTGAGACATTCAGACCAATCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACAGGAAATGTAGGAAGCTGTTCTCCACTGGCCAATGGCTCAGCTGCACCTAATGCAGAGGTAATACACAACTTTCCATCTCACTCAAATGTCACTCCTCCAAATCAGCAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCATTAATACATATCTTGGCACCAAACCTTGTACTTTTGACAAGATGCCAGAGTCTGTAAGAGGTTTGGGCTCATTTAATTCCTCTGAACTCCGAACATTACGGAACAATGGTATCTCTTCGTCTCAGAAGAAAACTTATGCCCAGGAAGAATATATGGAAATTGTTAGAGGACAAGTGGGAAGCTCTGAACATGAATTCAAAGCCGAACACACTCATTATGAGCTTCACCATTATAATCACATTTCCCGTAAAGTGGCTGTAGATCTCCAATCAGATCATGATCTCTTACTCAAAAGATCAACCAACACTGCTCAGCAATGTGTATCATCAAATGCGTTTGGAGGGCCAGCAGAAAGTAATGCTGCAAACTACACAATAGATGGAAATGCTGGGGAGAGTGATCACGGGAGCAATGGACATGGGAGCAATGGACAGGACGGAACCATGACAATGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTGTTGGGAGCATTGGAGTTGGTGGCATTGATAGGAAAACCATTGGGAATGGGGCAGATGAAGGACGACTTTCATTGAGAGAGGCTGCTTTGACCAAGTTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAAAAACTAGCAGAACAGCGACCTCGTATTAGGGGACAATTTGTTAGACGAACAGTGTCTGAAGCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGCGACCTCCAGCTTCTTGCTGTCAGATTAGTCCTTCACACAATCACCTAGGAAGGACCTCGGAAGTTTGTGTAGTGGAACCTGTGATTAGGTAG 1740 0.4362 MHGGKRGCHVDHGNVSNVDGDEESMAWRLDWVVSSWTKCLAQVGSPHPLSPPKQLVDPPDSTCAQVMQTKTEKVSSRWVHATEKECLELINHLDDVAMGKDLAVGISLSIQREDRLEGLSSHPMGKGANKMSDDDDMQIVKGQSNACENGEMEYNGGKTRTQENQTMNVIDVTDSNSPQAESRDLNTPNGFSGFSLTKENSCPKEHPSLELTLKRLGEVRDPKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTGNVGSCSPLANGSAAPNAEVIHNFPSHSNVTPPNQQSNGSNNINDMASINTYLGTKPCTFDKMPESVRGLGSFNSSELRTLRNNGISSSQKKTYAQEEYMEIVRGQVGSSEHEFKAEHTHYELHHYNHISRKVAVDLQSDHDLLLKRSTNTAQQCVSSNAFGGPAESNAANYTIDGNAGESDHGSNGHGSNGQDGTMTMRTVNVENGNVAVGSIGVGGIDRKTIGNGADEGRLSLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRRTVSEAKEEKDHQSDNLRPPASCCQISPSHNHLGRTSEVCVVEPVIR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02008 579 Pfam CCT motif 491 533 IPR010402 GO:0005515
Vimu5g02008 579 ProSiteProfiles CCT domain profile. 491 533 IPR010402 GO:0005515
Vimu5g02008 579 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 186 537 IPR045281 GO:0009909
Vimu5g02008 579 MobiDBLite consensus disorder prediction 412 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02008 Vimu-Chr5 31982065 31988773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02008 483 536 Response Regulator Gene Family AT5G02810 79.630 4.08e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g02008 CCT 6.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02008 K12129 - gmx:100785796 664.07