Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02004 ATGTTAGATCTTAATCTCAATGCGGAGTGGACCGATTCGGCTCGTGACGGCGACTCGCCGTTTCCGTTAGAGGAGTTTCCTGAAGGTTCGCGGAACCAAATGGCGGAATCAGGGACTTCGAATTCCTCTGTGGTGAATGCGGACGGGTCCAGTAACGGCTGCTGCGACGAGGACTCGTGCTCCACGCGCGCTGATGACGTGTACACCTTCAATTTCGATATCCTTAAAGTAGAGGGCGCGAACGACGTCGTAACAAAGGAGTTGTTTCCGGTAAGTGGAGGAGTGGCAACGTCGTCGTTTTCGGCGAGAGAAAGTTTCGTGGATCTCGCGTTCGATCGTGAGGGAGGAAACAGTGACACAAAGATGCTTCAGCCGCAGCCTCAGACTCAGACGCAGCAACCGGCGAAGAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTACAGAGGGGTTACCTTTTATAGAAGAACGGGAAGATGGGAATCGCATATCTGGGTACATTTTAAGCATTATTTGATGGAATTGGTATTTGAACTTGTAGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTGAGTGATTATGAAGATGATCTTAGACAGATGAAGAATTTGTCCAAGGAGGAATTCGTACATATACTGCGCCGCCAAAGTACCGGTTTCTCAAGAGGAAGTTCTAAATACCGAGGAGTTACTCTCCACAAGTGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGATTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTGACCAACTTTGAGCCAAGTACATACGAAGGAGAGATGAAATCTGCAGCCATAAATGAAGTTAGCAATCATAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGAACTGGTCCCAAAGAAAATTGGCAGCAACTTCAGTTCCCCTCTGTCCATTACAACACGCATGGTGGAATAAGTTCAATGATGGAAACCAATGTTGATTCAGGAGTTGGTAATCCATCTTTGAAAAGACTGGTTGTGAATGAAGACTGTCCTTCTGTATGGAATGGAATGTGTCCTAGTTTCTTTCCCAATGAGGAAAAAAAAGAGAGAATGAACACGGAGCATTCGAAAGGAGTGCCCAATTGGGCGTGGCAAACGCATGGCCAGGTCAATGCTACCCCAGTACCAACGTTCTCTGCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCTCCCACTGCCACCTTTCCAACAAGATCTATGAACTCCAATCCCCAGAGTCTCTGTTTTACTTCATCCAGCATGCATTCGTCTGAATATTATTACCAGGTTAAGCCCCGGCAGGCTCCACTGTAG 1467 0.4717 MLDLNLNAEWTDSARDGDSPFPLEEFPEGSRNQMAESGTSNSSVVNADGSSNGCCDEDSCSTRADDVYTFNFDILKVEGANDVVTKELFPVSGGVATSSFSARESFVDLAFDREGGNSDTKMLQPQPQTQTQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWVHFKHYLMELVFELVGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEDDLRQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEVSNHNLDLNLGIATPGTGPKENWQQLQFPSVHYNTHGGISSMMETNVDSGVGNPSLKRLVVNEDCPSVWNGMCPSFFPNEEKKERMNTEHSKGVPNWAWQTHGQVNATPVPTFSAAAASSGFSISATFPPTATFPTRSMNSNPQSLCFTSSSMHSSEYYYQVKPRQAPL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02004 488 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 FunFam AP2-like ethylene-responsive transcription factor 147 213 - -
Vimu5g02004 488 SUPERFAMILY DNA-binding domain 147 212 IPR016177 GO:0003677
Vimu5g02004 488 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Vimu5g02004 488 Gene3D AP2/ERF domain 147 212 IPR036955 GO:0003700|GO:0006355
Vimu5g02004 488 MobiDBLite consensus disorder prediction 116 149 - -
Vimu5g02004 488 MobiDBLite consensus disorder prediction 1 56 - -
Vimu5g02004 488 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 MobiDBLite consensus disorder prediction 32 56 - -
Vimu5g02004 488 FunFam AP2-like ethylene-responsive transcription factor 246 306 - -
Vimu5g02004 488 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 SMART rav1_2 148 217 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 MobiDBLite consensus disorder prediction 119 137 - -
Vimu5g02004 488 SUPERFAMILY DNA-binding domain 246 305 IPR016177 GO:0003677
Vimu5g02004 488 ProSiteProfiles AP2/ERF domain profile. 148 211 IPR001471 GO:0003700|GO:0006355
Vimu5g02004 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 339 - -
Vimu5g02004 488 Pfam AP2 domain 246 296 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02004 Vimu-Chr5 31878717 31882030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02004 73 330 AP2-EREBP Transcription Factor Family AT4G36920 62.637 1.36e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu5g02004 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02004 K09284 - gmx:100788303 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00580 4 4266892 4270216 Vimu5g02004 5 31878717 31882030 PCT