Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02002 ATGGGAAAATCTTACCCAACCGTCAGTGCCGATTACCAAAAGGCCATTGAAAAGGCAAAGAGGAAGCTCAGAGGTTTCATCGCTGAGAAGAGATGCGCTCCTCTGATGCTCCGTCTGGCATGGCACTCTGCTGGTACCTTCGACGTTAGCACAAAGACCGGTGGTCCCTTCGGAACCATCAAGCACCCTGCGGAACTCGCTCACGGTGCCAACAACGGTCTCGATATCGCTGTTAGGCTTTTGGAGCCAATCAAAGCAGAGTTTCCTATCTTGAGCTACGCAGATTTCTATCAGCTGGCTGGAGTTGTCGCAGTTGAGATAACTGGTGGACCCGAAGTACCTTTTCACCCGGGCAGAGAGGACAAGCCAGAACCACCTCCAGAGGGTCGCTTGCCCGATGCAACCAAGGGGTCTGATCACCTTAGGGATGTGTTCGGCAAGGCTATGGGGCTTAGTGATCAGGATATTGTTGCTCTATCTGGTGGTCACACCATTGGAGCGGCACACAAGGAGCGTTCAGGATTTGAGGGCCCGTGGACCTCAAACCCTCTGATATTTGACAACTCATACTTTAAGGAGTTGTTGAGTGGTGAAAAGGAAGGCCTCCTTCAGCTGCCTTCTGACAAAGCACTTTTGTCAGATTCCGTATTCCGCCCTCTTGTTGAAAAATATGCAGCGGACGAAGATGCCTTCTTTGCTGATTATGCAGTTGCTCACCAAAAGCTTTCTGAGCTTGGGTTTGCTGAAGCGTAA 753 0.5086 MGKSYPTVSADYQKAIEKAKRKLRGFIAEKRCAPLMLRLAWHSAGTFDVSTKTGGPFGTIKHPAELAHGANNGLDIAVRLLEPIKAEFPILSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFKELLSGEKEGLLQLPSDKALLSDSVFRPLVEKYAADEDAFFADYAVAHQKLSELGFAEA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02002 250 MobiDBLite consensus disorder prediction 115 137 - -
Vimu5g02002 250 Coils Coil 9 29 - -
Vimu5g02002 250 ProSitePatterns Peroxidases proximal heme-ligand signature. 155 165 IPR019793 -
Vimu5g02002 250 Gene3D Peroxidase, domain 2 132 239 - -
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 223 247 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 12 32 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 149 170 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 51 61 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 130 147 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 171 195 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 33 48 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 65 89 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 90 108 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Plant ascorbate peroxidase signature 109 121 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Haem peroxidase superfamily signature 91 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Haem peroxidase superfamily signature 155 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Haem peroxidase superfamily signature 33 47 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 PRINTS Haem peroxidase superfamily signature 109 121 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 FunFam Cytosolic ascorbate peroxidase 19 138 - -
Vimu5g02002 250 CDD ascorbate_peroxidase 5 250 - -
Vimu5g02002 250 ProSiteProfiles Plant heme peroxidase family profile. 74 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 FunFam L-ascorbate peroxidase, cytosolic 132 239 - -
Vimu5g02002 250 Gene3D - 19 246 - -
Vimu5g02002 250 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 8 246 IPR044831 GO:0004601|GO:0034599
Vimu5g02002 250 ProSitePatterns Peroxidases active site signature. 33 44 IPR019794 GO:0004601
Vimu5g02002 250 Pfam Peroxidase 22 227 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02002 250 MobiDBLite consensus disorder prediction 113 137 - -
Vimu5g02002 250 SUPERFAMILY Heme-dependent peroxidases 5 246 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02002 Vimu-Chr5 31821530 31827540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02002 72 246 Peroxidase AT4G17690 32.394 2.12e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02002 K00434 - gmx:606508 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02002 5 31821530 31827540 Vimu5g02002 5 31821530 31827540 ECH