Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02001 ATGGCTGGAGGTAATCCGAATGGCGTAGCTGATTTTCCGGCGGTTTCGACGCACGGCGGACAGTTCATTCAGTACAACATATTCGGCAACCTATTCGAGGTTACGACGAAGTATCGTCCTCCAATCATGCCTATTGGACGCGGCGCTTACGGAATCGTTTGCTCGCTGCTGAATACGGAGACGAATGAGCTGGTGGCTGTTAAGAAAATAGCGAACGCTTTCGACAATCACATGGACGCTAAGCGAACGCTCCGTGAGATTAAGCTTCTTAAACATTTGGATCATGAAAATGTAATTGGTTTGAGAGATGTTATTCCTCCACCATTGCGTAGAGAGTTTAATGATGTCTACATAGCCATGGAACTCATGGATACTGATCTTCATCACATCATTCGCTCAAATCAAAGTCTTTCGGAGGAGCACTGCCAATACTTTTTGTATCAGATTCTTCGTGGGCTAAAGTATATACATTCTGCAAATATAATCCATAGAGATTTAAAACCGAGCAACCTGTTGTTGAATTCTAATTGCGACTTGAAGATTATTGACTTTGGTCTTGCCCGACCAACTATGGAAAGTGACTTCATGACAGAATACGTTGTCACAAGATGGTACAGGGCTCCCGAATTATTGTTGAACTCCTCAGATTACACCTCTGCGATAGATGTGTGGTCTGTTGGTTGCATCTTCATGGAGCTTATGAATAAAAAACCTCTCTTTCCAGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACCCCAACTGATGCTGACCTTGGGTTAGTAAAAAATGAAGACGCAAGAAGATATATTAGACAGCTTCCTCAATATCCTCGCCAACCTTTAGCTCAGGTTTTTCCCCATGTTCATCCCGCAGCCATGGATCTTGTTGATAAAATGTTGACAATTGATCCCACCAAAAGAATTACAGTTGAAGAAGCGCTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGATGAACCAATCTGCATGGAGCCATTCTCTTTTGAGTTTGAGCAACAACCATTGGATGAAGAGCAAATAAAAGAGATGATATACAGGGAAGCATTAGCACTCAATCCTGAGCATGCTTAA 1116 0.4301 MAGGNPNGVADFPAVSTHGGQFIQYNIFGNLFEVTTKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDNHMDAKRTLREIKLLKHLDHENVIGLRDVIPPPLRREFNDVYIAMELMDTDLHHIIRSNQSLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNSNCDLKIIDFGLARPTMESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTELLGTPTDADLGLVKNEDARRYIRQLPQYPRQPLAQVFPHVHPAAMDLVDKMLTIDPTKRITVEEALAHPYLEKLHDVADEPICMEPFSFEFEQQPLDEEQIKEMIYREALALNPEHA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02001 371 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Vimu5g02001 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vimu5g02001 371 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Vimu5g02001 371 FunFam Mitogen-activated protein kinase 24 133 - -
Vimu5g02001 371 FunFam Mitogen-activated protein kinase 123 352 - -
Vimu5g02001 371 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Vimu5g02001 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 327 - -
Vimu5g02001 371 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02001 371 CDD STKc_TEY_MAPK 32 368 - -
Vimu5g02001 371 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Vimu5g02001 371 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02001 371 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu5g02001 371 Pfam Protein kinase domain 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02001 Vimu-Chr5 31815142 31817708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02001 10 371 MAP Kinase Gene Family AT3G45640 83.702 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu5g02001 Pkinase 7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02001 K20536 - gmx:100801339 734.947