Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01999 GGCAGTTGCCAAAGGGAAACTGAAACAGAGTCTATCTGTCTAACGAACCAAAACAGCACGCTTCAAATTCAAACAAACAAAGCCAAACACATAACAAAACGGTTTTCTCAGATCCAGAACCGAACTTCCATTCTCAAAAAGATGAATGAGTTCGTAGAAAACTTGCCGCCAATGGATCTGATGCGTTCGGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGCAGAGTCCTCGCACCGCGCCATCACCTATTTAGGCGAACTCGGCCTCATCCAATTCCGAGACTTAAATGCCGAAAAAAGCCCCTTTCAGAGAACATTTGTTAACCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCTGGTCTAGTGTCTTCTCCTTCGGTCTTGCAATCAGATATTCACCTGGAGGATTTAGAGATACAACTTGCTGAGCATGAACATGAGCTAATTGAAATGAACTCTAACAGTGAGAAACTTCGGCAATCATATAATGAACTGCTGGAGTTCAAGATTGTATTAGAAAAGGCATGTAGTTTTCTTGTTTCAAGCCATGGTGCTGTCATTTCAGAAGAGCGAGAATTGGAGGAGAATGTTTTCTCAAAGGGAAACTATGTCGAGACGCCATTTTTATATCAACAGGTTCCTTTGAGTTATAAATGGTTTATTTTACAGGAAATGACACCTGCACCGTCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGATTTGAAAGGATGTTGTTTCGAGCTACGAGAGGGAATATGCTTTTCAATCAGGCACCGGCTGATGAACAAATCATAGATCCTATTTCATATGAGATGGTTGAGAAAATTGTCTTTGTTGTGTTCTTCTCTGGGGAGCAAGCAAGAACAAAGATCCTGAAAATTTGTGAAGCATTTGGTGCAAATTGTTACCCTGTCCCTGAAGATATAAGTAAGCAGAGGCAAATAACATCAGAGGTTTCGGCACGCCTTGCAGACTTAGAGGCAACTCTGGAAGCTGGAATTAGGCATCGGAACAAGGCTCTAGCTTCTGTAGGAGGCCCTTTAACAATATGGATGGACATGGTAAGAAGAGAGAAGTCTGTGTATGATACACTGAACATGTTAAACTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTGTATTTGCAAAAACACAGATTCAGGAGGCACTGCAACGTGCAACTTTTGACAGCAATTCTGAGGTTGGCATAATCTTTCATTCAATGGATGCTCTGGAATCACCACCTACATATTTTAGGACCAACATTTTCACAGGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAGTTATTACATTCCCTTTTCTTTTTGCGGTGATGTTTGGCGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTGGTTCTCATAGCACGTGAGAGCAAGCTCAGCACCCAGTGCATAACAGCTCTTCGATTTGATTTCTTCCAGCGCCTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTACTTTTGATGTCTCTATTTTCTATTTATTGTGGGTTAATATACAATGAATTCTTCTCTGTTCCTTATCACATATTTGGTGCCTCTGCTTACAAATGCCGAGATAATACATGCAGGTGTCTTTTATTTCTCACTTTCCATTGCCAGTTTCAATTCTCTCTTTTTTTGGGTGCCATAATGTGGATCCACAATGCATTTGTTGCTGGTGTTTTAGTTTATATTGTCAGAGCTTGCAAAATATTGCTAAGTTGTTTTCTAAGAAGGCTTTTACGTGATGTGTATTTTTTTTATCACTTTCCATCCCAGGGATGCACATACTACTGGCTTAGTAAAATATCGAGAACCATATCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGTCGATCAGAATTGCCTTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCACATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCATTTCTTTGGCAGCTCACTGGATATAAGGTTGTGTTGTTGCTTTTGTCTGTAATTGCAGTTCCGTGGATGCTCTTTCCAAAACCTTTTATGCTAAAGAAGCTTCATAATGAGAGATTTCAAGGACGCACTTACGGTGTGCTTAATTCCTCTGAGGTTGATCTTGAGTTGGAACCAGGTTCTGCCAGGCAACGTGACGATGACTTCAATTTCACAGAAGTCTTCGTTCACCAAATGATTCACTCCATTGAGTTTGTCCTAGGTTCAGTTTCAAATACGGCATCATATCTACGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATCTTATCATTCGGTTGCTCGGACTAGCTGTCTTTTCCTTTGCAACTGCCTTTATACTATTAATGATGGAGAGTCTCAGTGCTTTTCTTCACGCGTTGCGTCTTCACTGGGTGGAATTTCAGAATAAATTTTACCATGGCGATGGATGCAAGTTCAAGCCTTTTTCCTTTGCTTCCTTAACAGAGGATGAAAGTTGA 2670 0.4094 GSCQRETETESICLTNQNSTLQIQTNKAKHITKRFSQIQNRTSILKKMNEFVENLPPMDLMRSEKMTFVQLIIPAESSHRAITYLGELGLIQFRDLNAEKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLVSSPSVLQSDIHLEDLEIQLAEHEHELIEMNSNSEKLRQSYNELLEFKIVLEKACSFLVSSHGAVISEERELEENVFSKGNYVETPFLYQQVPLSYKWFILQEMTPAPSDQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIIDPISYEMVEKIVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITSEVSARLADLEATLEAGIRHRNKALASVGGPLTIWMDMVRREKSVYDTLNMLNFDVTKKCLVGEGWCPVFAKTQIQEALQRATFDSNSEVGIIFHSMDALESPPTYFRTNIFTGPYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQCITALRFDFFQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNTCRCLLFLTFHCQFQFSLFLGAIMWIHNAFVAGVLVYIVRACKILLSCFLRRLLRDVYFFYHFPSQGCTYYWLSKISRTISIWCGSQLAGKSIRIAFSKLSQDEDVHSVWCGAHELGNYIKLFQCSFLWQLTGYKVVLLLLSVIAVPWMLFPKPFMLKKLHNERFQGRTYGVLNSSEVDLELEPGSARQRDDDFNFTEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLLGLAVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGCKFKPFSFASLTEDES 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01999 889 PANTHER VACUOLAR PROTON ATPASES 60 573 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu5g01999 889 Pfam V-type ATPase 116kDa subunit family 84 572 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu5g01999 889 Pfam V-type ATPase 116kDa subunit family 708 881 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu5g01999 889 Coils Coil 146 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01999 Vimu-Chr5 31792140 31803209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01999 48 882 Primary Pumps ATPases(2) AT2G28520 63.895 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01999 K02154 - gmx:100800799 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00587 4 4319757 4329283 Vimu5g01999 5 31792140 31803209 PCT