Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01992 ATGCTTCCAGCTTCTCCTTTTCTTTATAAAAAGGATTTGGATTCAGCTTCCATTAACAAACCCCACCAAGCCACAACCACACCCTCTTCTTCTTTCTTTCTTTCTGTCTCTCAAACACAACACAACCAGAGAACAGACACACACAAAGGAACAAACAAACAAACAAGGTTAGAAACTGAGATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCTCCACTTTCTCACTCCCCCACTTCCTCTTCTTCTTCACCACCACCTCCTCCACCTCCCACTGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCGTATTTCCCTCCCACTGAACCTGCAAAGTTTACCATTGCTCACCGTGTGTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCCAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATCTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAATCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATCTGCATGGAAATGGCACAGAGCCCACAGGAATCACCACAACAATCAGTGGACAATTTCATTTCAACTCCTCCTCACACTGGCGGCTATCAAAGCGGCATGAACAACTTCTTCGAGGAGAACACTAGCCCAAACGCTCTATGGGAGCCCCTTTGGACTTGA 795 0.4755 MLPASPFLYKKDLDSASINKPHQATTTPSSSFFLSVSQTQHNQRTDTHKGTNKQTRLETEMESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGGYQSGMNNFFEENTSPNALWEPLWT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01992 264 Pfam Lateral organ boundaries (LOB) domain 98 195 IPR004883 -
Vimu5g01992 264 Coils Coil 177 204 - -
Vimu5g01992 264 MobiDBLite consensus disorder prediction 18 45 - -
Vimu5g01992 264 MobiDBLite consensus disorder prediction 18 93 - -
Vimu5g01992 264 MobiDBLite consensus disorder prediction 61 80 - -
Vimu5g01992 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 97 223 - -
Vimu5g01992 264 MobiDBLite consensus disorder prediction 46 60 - -
Vimu5g01992 264 ProSiteProfiles LOB domain profile. 97 198 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01992 Vimu-Chr5 31713993 31715620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01992 94 264 AS2 family AT2G28500 65.934 1.26e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu5g01992 LOB 4.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01992 - - gmx:100789504 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01992 5 31713993 31715620 Vimu5g01992 5 31713993 31715620 ECH
Vimu4g00595 4 4397270 4397950 Vimu5g01992 5 31713993 31715620 PCT