Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01991 ATGGACTTCAGAGAAGACTTTACCCTCGTGTCGGAGCAGCGCCGGGAGTTCGCCAACGCGGAGGACATGGAATCCGACCTGGAATTTGCCTTCAGCCTCCAATTGCAGGAGGCTCTCGAGGCCTCCCTCGCTTTGAATCCATCTTCCTCCTCCGCTGTTATCGAACAACCTACTGTTGACGAAGAAGGCGTGCTAAATGCGACCTCACTGCAGAATGAGGAGTTGGCGCGTGTGGAGTGCGAGATGAAGGACCGGGAGCAGAGCGAGAGGGAAATGCAGAAGATGAGGGAGGATCTCTGTCGAAGGATCCACGACCAGAAGGTGGCGATGGATATATTGACGATTTCTGAGGAGGATTGGCAGCAGTGGGGCGATAACTTTGAGAAGCCGCTCGGTGAGGGTTCATCGTCTTCGGGTAGGACGGAGACTGAGGAAGGCTTGGTTAGGATTTACTTGAAGGGTTTGGTGAGCGAGGAAAACGTGAGGGGGGACAAGATTGTGTTATCTGGGATAGGGGTTGCGATTTGTGACCGTAGGGATAATTTGATATTCGAAGTTTCTAAGGCGGTGATTGGGAATGACACTAGCAAGGTCGCAGTGGAGATTAAGGCGTTGATTGAAGCCTTCAATATGGCCCTTGCTTTGGACTTAAAGCGCATAGTTTACTATACCGATAATTATCCGCTCCTCCAATTTGTGAGAGGAAAATGGTCTGCAAGACAGCGGAAGATTGCCATGTTGGTTGATCAAGTTCATCTGCTTCAGAGGAAGTTTACATACTGCGATTCAAGGCTTTTGGCCAGAAATGATTTCAAGTTTGCATTTAAGCTTGCGAGGGATGCGATTGTGTCTCAATCTATGAGACCCGCGGGACCTGGGAGTACGAGGAGTTTGAATGAAAATTGTGCTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATGGATGTCAACACCGCTATTGCTTTTCTTGCATGAAACAACATGTTGAGGTGAAGTTGCTTCATGGAATTGTGCCTAAGTGCCCTCATGAGGGATGTAAGTATGAACTTCTGGTTGACAGCTGCCAGAAGTTCTTGACTCAAAAGTTAACTGATATCATGCGTCAACGACAAGCGGAAGCTTCAATTCCTGTTACTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGAGAAAAACTGAGGTCTTTGAGTACTCGAAAAATCTTATTGGTGAATCTGAACTGTCGGGACCCAAGAAATGCTTAAAATGTCATGGCCTTTTCTGTTTTAACTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTTTGTGTACAAAACGTTGAATCCCAACCCTCCTGCTGAAGATTTGAAGCTAAAGTTTCTGGCATCAAGGAGCCTATGGCGGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTTTCGAATTTTGCTATAACTGTGGTGCCGAGTGGAAGGACAAAAAAGCAACGTGTTCTTGCCCGCTCTGGGCAGAAGACAATATTTGGATGGAAGAGAGAGAGTTGGACGAGATTGACGATGATGACGAGGACAATGACTACGACCATGATGACTACGACGACGACTTTGGAGGTTGGCGTTGA 1659 0.4684 MDFREDFTLVSEQRREFANAEDMESDLEFAFSLQLQEALEASLALNPSSSSAVIEQPTVDEEGVLNATSLQNEELARVECEMKDREQSEREMQKMREDLCRRIHDQKVAMDILTISEEDWQQWGDNFEKPLGEGSSSSGRTETEEGLVRIYLKGLVSEENVRGDKIVLSGIGVAICDRRDNLIFEVSKAVIGNDTSKVAVEIKALIEAFNMALALDLKRIVYYTDNYPLLQFVRGKWSARQRKIAMLVDQVHLLQRKFTYCDSRLLARNDFKFAFKLARDAIVSQSMRPAGPGSTRSLNENCAICLEDTDVSQIFSVDGCQHRYCFSCMKQHVEVKLLHGIVPKCPHEGCKYELLVDSCQKFLTQKLTDIMRQRQAEASIPVTEKVYCPYPRCSALMRKTEVFEYSKNLIGESELSGPKKCLKCHGLFCFNCKVPWHSGMTCFVYKTLNPNPPAEDLKLKFLASRSLWRQCVKCNHMIELAEGCYHMTCRCGFEFCYNCGAEWKDKKATCSCPLWAEDNIWMEERELDEIDDDDEDNDYDHDDYDDDFGGWR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01991 552 Pfam IBR domain, a half RING-finger domain 461 510 IPR002867 GO:0008270
Vimu5g01991 552 Pfam IBR domain, a half RING-finger domain 382 442 IPR002867 GO:0008270
Vimu5g01991 552 SMART ibrneu5 369 442 IPR002867 GO:0008270
Vimu5g01991 552 SMART ibrneu5 455 512 IPR002867 GO:0008270
Vimu5g01991 552 ProSiteProfiles Zinc finger RING-type profile. 302 346 IPR001841 -
Vimu5g01991 552 FunFam RBR-type E3 ubiquitin transferase 148 285 - -
Vimu5g01991 552 FunFam RBR-type E3 ubiquitin transferase 440 549 - -
Vimu5g01991 552 Gene3D - 440 545 - -
Vimu5g01991 552 CDD Rcat_RBR_unk 468 503 - -
Vimu5g01991 552 MobiDBLite consensus disorder prediction 529 544 - -
Vimu5g01991 552 SUPERFAMILY RING/U-box 456 519 - -
Vimu5g01991 552 ProSiteProfiles TRIAD supradomain profile. 298 522 IPR044066 -
Vimu5g01991 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 381 IPR013083 -
Vimu5g01991 552 Gene3D - 149 288 IPR036397 GO:0003676
Vimu5g01991 552 MobiDBLite consensus disorder prediction 529 552 - -
Vimu5g01991 552 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 524 IPR031127 GO:0004842|GO:0016567
Vimu5g01991 552 Coils Coil 78 98 - -
Vimu5g01991 552 SUPERFAMILY RING/U-box 301 381 - -
Vimu5g01991 552 CDD BRcat_RBR_unk 382 445 - -
Vimu5g01991 552 ProSitePatterns Zinc finger RING-type signature. 320 329 IPR017907 -
Vimu5g01991 552 FunFam RBR-type E3 ubiquitin transferase 297 382 - -
Vimu5g01991 552 Pfam Reverse transcriptase-like 165 281 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01991 Vimu-Chr5 31684206 31687602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01991 149 501 C3H Transcription Factor Family AT2G19610 33.983 9.92e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01991 - - aprc:113858620 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01991 5 31684206 31687602 Vimu5g01991 5 31684206 31687602 ECH