Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01983 ATGTCTGTGGTTGGGACAATAGGCTATATTGACCCTGAGTATGCCAAGAGTTCAAGGTTGAATGAAAAATCTGAAGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTAACAGGAGAAGAAAGTAAACTCATACATGGCTTGCAAATATTATCTAAGGCAGATAACAACAGTATAACGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTACTCTTCTGAGGTTTTTTAACCCCCGTAGGCAAATTTGCCTCCTATATTACCAATATGGGCAAATTCAAAGTCAAGGGGAAGTCGTGCCACCTCCATACGACTTTGAAAGGAGAAGTCGTGTCACCCCTGCACGACTTCACACTGTTCACATGAACAGTGATGAAGTCGTGCTACCCAAAAACGACTTTATCTATTGA 447 0.4183 MSVVGTIGYIDPEYAKSSRLNEKSEVYSFGIVLLELLTGEESKLIHGLQILSKADNNSITETVDPEVSITCMDLTHVKKTFQLTLLRFFNPRRQICLLYYQYGQIQSQGEVVPPPYDFERRSRVTPARLHTVHMNSDEVVLPKNDFIY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01983 148 Gene3D Transferase(Phosphotransferase) domain 1 1 89 - -
Vimu5g01983 148 PANTHER OS07G0107800 PROTEIN-RELATED 2 84 - -
Vimu5g01983 148 SUPERFAMILY Protein kinase-like (PK-like) 2 40 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01983 Vimu-Chr5 31627073 31627615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01983 3 86 Receptor kinase-like Gene Family AT5G62230 67.045 1.29e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vimu5g01983 PK_Tyr_Ser-Thr 3.8e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01983 K20718 - var:108323624 132.109