Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01979 ATGCATAAGGTGGATAGTGCAGAAGAAGACAGTGTGTGGATTCAGGGTAGTGGTACCATCAAAGGAGAATCTCTGGCAGAAGGTTCTGGAACTAAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAGGAACAGGTGGCAAAATTAGTTGATGATACCTATAGGAAAATGCAGATATCTGGGGCCACTGATCTAGCATCTAAGGGACAGGGGGCATCAGATAGTAGTAGTATAAAGGTGAAAGGTGAAATTGATGATTCCTTCCAGCCAGATACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAAGTGTGGCAGCACATCAGTTGCGTTATTATTCCAGAGAAACCTACAGAAGGCATCCCACCAGTTCCTGATAAGTTTTATTGTGAACTATGTCGTCTTGCACGTGCTGACCCATTTTGGGTTGCAGTGGCGCACCCTTTACTTCCTGTGAAGTTAACAACAACCAGTAATCCAACTGATGGTGACATTGCTGTTATATGGCGGTTGCCATGGCAGATTTTTTTGCCAATCCCCATAGTCAACTTTGGAGGAAGGCTTGCTTTAGTACCACCATAG 627 0.437 MHKVDSAEEDSVWIQGSGTIKGESLAEGSGTKVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSIKVKGEIDDSFQPDTKIRCLCGSRLETEDLVKCDDPRCQVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLARADPFWVAVAHPLLPVKLTTTSNPTDGDIAVIWRLPWQIFLPIPIVNFGGRLALVPP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01979 208 SUPERFAMILY FYVE/PHD zinc finger 90 152 IPR011011 -
Vimu5g01979 208 CDD PHD_Bye1p_SIZ1_like 97 148 - -
Vimu5g01979 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 154 IPR013083 -
Vimu5g01979 208 ProSitePatterns Zinc finger PHD-type signature. 98 148 IPR019786 -
Vimu5g01979 208 MobiDBLite consensus disorder prediction 1 45 - -
Vimu5g01979 208 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 27 172 - -
Vimu5g01979 208 SMART PHD_3 97 149 IPR001965 -
Vimu5g01979 208 Pfam PHD-finger 97 149 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01979 Vimu-Chr5 31571045 31574128 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu5g01979 PHD 3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01979 - - gmx:100793735 290.426