Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01970 ATGGAATTTGATCTGAACCATGAAGTCACTGAGGTTGAGAAGAATGCATTCTGTGATAGGGAATGTGAGAAAGATGCTGGTGTCAGTTGCTGGTCCTCTTCCACCTCTTCATCTTCTAGTTCCTCTTCGGCTCGTGTGTCCTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCATTTCATACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGACGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCAGAGTTGGAAGTGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGAGGTGAAAATGGTGAACTGAGGTTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCCAATGTTCTTTCTTCCGTGGCAAATGCAGTATCCACGAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGGGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACATTGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGCACGAGGCAGTGGGTTGGTGGGTTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGTTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGCTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGATTGATTTGAATCTTGGTGCCTGGGGAATGCCCAATCTGGGTTTCAACCTTCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGGTCAACCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAAAGACAAAATGTCCCATTTAATAAACCATCCACTCAGGCAGGAACCATTGTAAATGAAGTTGGACAACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATAGGGGTTCCTAATGACAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTTGGGTTTTCTTTATCTGGGGAAACCACTACCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGATTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTGACAACGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGATCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAGATGACCATTGGGATGATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCGAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2376 0.4461 MEFDLNHEVTEVEKNAFCDRECEKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSHFIPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEVMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRASHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCNSGTLIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSQLITARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPLGFEMSSPSHPNLGSAEVRKATSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKIDLNLGAWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAGQPSLFCSKSTTFQRQNVPFNKPSTQAGTIVNEVGQPELPNEHKLQDNLSAAAALGAANIGVPNDNNVQGKVNACKLFGFSLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFGMEGLLKDPDNGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01970 791 Gene3D - 659 752 - -
Vimu5g01970 791 Gene3D - 162 266 IPR015300 -
Vimu5g01970 791 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Vimu5g01970 791 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vimu5g01970 791 FunFam Auxin response factor 162 266 - -
Vimu5g01970 791 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu5g01970 791 FunFam Auxin response factor 327 400 - -
Vimu5g01970 791 Gene3D - 327 398 - -
Vimu5g01970 791 SUPERFAMILY CAD & PB1 domains 666 742 - -
Vimu5g01970 791 FunFam Auxin response factor 658 752 - -
Vimu5g01970 791 ProSiteProfiles PB1 domain profile. 663 747 IPR000270 GO:0005515
Vimu5g01970 791 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 752 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu5g01970 791 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vimu5g01970 791 SMART B3_2 164 266 IPR003340 GO:0003677
Vimu5g01970 791 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01970 Vimu-Chr5 31516021 31521051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01970 46 791 B3 DNA Binding Superfamily AT5G60450 60.606 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu5g01970 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01970 - - gmx:100783513 1449.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00600 4 4429685 4445332 Vimu5g01970 5 31516021 31521051 PCT