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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vimu5g01965
ATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCACCCAGCTCAAACCCTAATAATAACAATCCTAATCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCTAAGTCCCTCATGGCCACCAATCGTTTCATATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTCCACAGACGCGGCCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGATCCCTCAAGAGCCTTGGGAGACTTGACTGGCATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCGGCAGCTTTAAGCAACTTGAGAAATGATAACCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAATCATTGGTGAATTATGCTGAGGCAAACCATCATCATCATCATCATCAACAGCAACAGCAGCAGCTGCAGCAGCAAAAGCTAAGGTTACCACTCTGGCTAGATCACCAGGCGAATTCACAAGTACTTCACCACCCCCTTATAAACTTCCCAACCAAACCAAGTGATTTCAATTCTTCGGGGCCAAACCCCGTGCCTGATGTGTTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGCAAGCTCGAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACTAGGGTGAACGACAACGCGTTTTGCTCCACGGGCAGCAATAGGAACAGCAACCACAACAATGTTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGCGGTGGTGGTGGGTATTTATTGAATGGTGACTCAAACAACTCGTTTGTGGTTGTGAACGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCAGCATCAATTATAGGAAAGCAATTACACTCCATAAGCTCACACAGCAAAAATCAACTCGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATCGAATCAATAAGGAGACCTTTTTTCGAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGGCTCAGGCATGAACCTGCAGAGCCAGTACGGTGGACATTATGTCTAG
1641
0.4668
MSEESFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPADPDAEVVALSPKSLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDNHLTNAQASRIPQIFSGFHSDQFGGSGTSESLVNYAEANHHHHHHQQQQQQLQQQKLRLPLWLDHQANSQVLHHPLINFPTKPSDFNSSGPNPVPDVLQTMDMFGPQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSTGSNRNSNHNNVVNNVVVEVQKLDELVSVEGCTNLGGGGGGYLLNGDSNNSFVVVNGTKGLEHMVMPVDEETTAASIIGKQLHSISSHSKNQLGLTRDFLGVGDNNIESIRRPFFEQDLVEFNAMGSGSGMNLQSQYGGHYV
546
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vimu5g01965
546
ProSiteProfiles
Zinc finger C2H2 type domain profile.
70
92
IPR013087
-
Vimu5g01965
546
MobiDBLite
consensus disorder prediction
1
42
-
-
Vimu5g01965
546
FunFam
protein indeterminate-domain 12-like
49
118
-
-
Vimu5g01965
546
ProSitePatterns
Zinc finger C2H2 type domain signature.
72
92
IPR013087
-
Vimu5g01965
546
SUPERFAMILY
beta-beta-alpha zinc fingers
69
167
IPR036236
-
Vimu5g01965
546
MobiDBLite
consensus disorder prediction
1
54
-
-
Vimu5g01965
546
Gene3D
Classic Zinc Finger
51
122
-
-
Vimu5g01965
546
SMART
c2h2final6
70
92
IPR013087
-
Vimu5g01965
546
SMART
c2h2final6
112
142
IPR013087
-
Vimu5g01965
546
SMART
c2h2final6
147
167
IPR013087
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vimu5g01965
Vimu-Chr5
31449916
31452022
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vimu5g01965
39
217
IDZ Gene Family
AT3G45260
84.358
1.87e-112
340
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
C2H2
Vimu5g01965
None
None
None
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vimu5g01965
K25870
-
gmx:100817691
735.717
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Vimu4g00610
4
4510035
4511848
Vimu5g01965
5
31449916
31452022
PCT
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