Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01965 ATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCACCCAGCTCAAACCCTAATAATAACAATCCTAATCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCTAAGTCCCTCATGGCCACCAATCGTTTCATATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTCCACAGACGCGGCCACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGATCCCTCAAGAGCCTTGGGAGACTTGACTGGCATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCGGCAGCTTTAAGCAACTTGAGAAATGATAACCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAATCATTGGTGAATTATGCTGAGGCAAACCATCATCATCATCATCATCAACAGCAACAGCAGCAGCTGCAGCAGCAAAAGCTAAGGTTACCACTCTGGCTAGATCACCAGGCGAATTCACAAGTACTTCACCACCCCCTTATAAACTTCCCAACCAAACCAAGTGATTTCAATTCTTCGGGGCCAAACCCCGTGCCTGATGTGTTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGCAAGCTCGAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACTAGGGTGAACGACAACGCGTTTTGCTCCACGGGCAGCAATAGGAACAGCAACCACAACAATGTTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGCGGTGGTGGTGGGTATTTATTGAATGGTGACTCAAACAACTCGTTTGTGGTTGTGAACGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCAGCATCAATTATAGGAAAGCAATTACACTCCATAAGCTCACACAGCAAAAATCAACTCGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATCGAATCAATAAGGAGACCTTTTTTCGAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGGCTCAGGCATGAACCTGCAGAGCCAGTACGGTGGACATTATGTCTAG 1641 0.4668 MSEESFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPADPDAEVVALSPKSLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDNHLTNAQASRIPQIFSGFHSDQFGGSGTSESLVNYAEANHHHHHHQQQQQQLQQQKLRLPLWLDHQANSQVLHHPLINFPTKPSDFNSSGPNPVPDVLQTMDMFGPQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSTGSNRNSNHNNVVNNVVVEVQKLDELVSVEGCTNLGGGGGGYLLNGDSNNSFVVVNGTKGLEHMVMPVDEETTAASIIGKQLHSISSHSKNQLGLTRDFLGVGDNNIESIRRPFFEQDLVEFNAMGSGSGMNLQSQYGGHYV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01965 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vimu5g01965 546 MobiDBLite consensus disorder prediction 1 42 - -
Vimu5g01965 546 FunFam protein indeterminate-domain 12-like 49 118 - -
Vimu5g01965 546 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vimu5g01965 546 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Vimu5g01965 546 MobiDBLite consensus disorder prediction 1 54 - -
Vimu5g01965 546 Gene3D Classic Zinc Finger 51 122 - -
Vimu5g01965 546 SMART c2h2final6 70 92 IPR013087 -
Vimu5g01965 546 SMART c2h2final6 112 142 IPR013087 -
Vimu5g01965 546 SMART c2h2final6 147 167 IPR013087 -
Vimu5g01965 546 Gene3D Classic Zinc Finger 123 204 - -
Vimu5g01965 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 516 IPR031140 -
Vimu5g01965 546 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01965 Vimu-Chr5 31449916 31452022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01965 39 217 IDZ Gene Family AT3G45260 84.358 1.87e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu5g01965 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01965 K25870 - gmx:100817691 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00610 4 4510035 4511848 Vimu5g01965 5 31449916 31452022 PCT