Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01936 ATGGCGGAACCTGTCGCCAACACCCAACTCTCTCCCTCGAAAACCCTAGACTCAACCAACGGTCATGATTCTACTTTGGAACCGAATCAAATGCTTCCACAAGACGCTCAAATGAATCAAGAAGACGACGGCGTTGTTTCGACGAGGAAACGGAGTAGGGAAGACGACGACGGCGAGGAGCGATCGCTTCATCCCCTGTGGAAGACCAGCCTCTGCTCCTACTACAGGAGCCACAACAACTCATGCAACCACGGCGACACGTGCCGCTACGCGCACGGCGAGGAGGAACTCCGCCCTCGCCCCGATAACACATGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTAAAGACAGAGACGGGCGAAAAGTGCTCCGTCTCGGAGGACGTGATGATGACGGAAGCTGTTGTCGACGGCGACGATTACGATTCCAATCAGGCGCTTAGCAAATGCTTGGTGCATTTGCCACGTAAGTGGAGTTCCGAGAATCTGAGGAATTTTCTCAGCGAACAGGCAAGCCTGTTTGGTTATTTGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACCTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAAGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTCAAAAGAAAAGTAACTCCGGTGTTGCTTCCAATCAAGAATTGGATGAAGGGGACGATCCTTCGAGTGGAGCTTTGGATGCTGAAACAAATAACGACAAGTTGTCTGTTGATGGTTCTGTGTCTAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATCACCTACGATGATCAGTTGGAGCAGAAAAAAGCCTCTCTCATGCAGATTCTCAAAAAGCTTACAAGAAATGCTCGCAAAGCTTGTCCAAATGGGGTTTCTCTTCCTGAGTGGATTCTCAAGTCGAGGGAAATAGGTGGTCTTCCGTGCAAACTAGAAGGTATTATTGCATCTCCAATTGTAAATGGATACCGGAACAAGTGTGAATTCTCTGTTGGATATTCTCTGGAAGGCAATGTGACTGTAGGTTTCATGCTGGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAACCGAGTGCCCAAATGTTTCAACGATTGCTTGCAAATATGCTACAATGTTTCAGGAATTTCTGCAGCACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGCAGAACAAATGGGAATACTGATCATGCTGAAACTTTTGGTAGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTTCTGAATTTAAGAGGCTTGCTCACGCATTTGTTGCTGGAGCTACTTCACATTGTCCAACATTACCCCTCACAGCTCTGTTTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCTGCTGATGCACCACTGCATTTGCTACCACTTCCTAAAGCAGGTGGGGATCCTGAGATCAATGAAAACAATAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTCCGGTTCTCTATATCTCCAACCGCATTTTTCCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACACCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTGTCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACATTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAGCAAGATGATTCTAATACCCCTAAAAATGGCAATGACATTCCTGAGGATAGTGCCTGCCCAGAGGCTGAAAAGGGAGAAATGACATCTCATTGTCCAGAAAATAACAATGCAGAAGTTGGAAGTGAAGTTCAGAACGGTGGCACTTCTGAACAAGTTGACGGGATATCTGAACAGACAGAGAACGTGACAGGATCTCATTTAAAGGATGATGGAAATGTGCCTAAGGAACATGGCGACGATCCAAATGTCTGTGGAGGTGGCAATGACATTCCTGGGGATAGTACCTGCTCAAGGCCTGAAACCAATGATATGACATCTCCTTCAGAAGATAACAAGGCAGAAGTTGGAAGTGAAGATCAGAAGGTTAATTCTTCTGAAAATGGGAACACTTCCATGCAACAGTTCAAAAATGTTGTTGCCATTGTTGATCCTCCGCGTGCTGGACTTCATCCAACTGTAATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCGCAAAAATTGAGAAAGGTAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTAGCAAGGCACAGAGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAGTTGGTTATGCTTCTTGAGAGGTAG 2691 0.45 MAEPVANTQLSPSKTLDSTNGHDSTLEPNQMLPQDAQMNQEDDGVVSTRKRSREDDDGEERSLHPLWKTSLCSYYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGEKCSVSEDVMMTEAVVDGDDYDSNQALSKCLVHLPRKWSSENLRNFLSEQASLFGYLGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVIPRSFQKKSNSGVASNQELDEGDDPSSGALDAETNNDKLSVDGSVSKTRNLRDVVTPLAHITYDDQLEQKKASLMQILKKLTRNARKACPNGVSLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGNVTVGFMLGNFREGVTAVEEATECPNVSTIACKYATMFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTNGNTDHAETFGSIAEVMLIVQVSTANFDDALVASEFKRLAHAFVAGATSHCPTLPLTALFVQDHQGISNVAPADAPLHLLPLPKAGGDPEINENNNAMDVRIHDYINNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKQDDSNTPKNGNDIPEDSACPEAEKGEMTSHCPENNNAEVGSEVQNGGTSEQVDGISEQTENVTGSHLKDDGNVPKEHGDDPNVCGGGNDIPGDSTCSRPETNDMTSPSEDNKAEVGSEDQKVNSSENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPAKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01936 896 MobiDBLite consensus disorder prediction 44 62 - -
Vimu5g01936 896 Coils Coil 290 310 - -
Vimu5g01936 896 MobiDBLite consensus disorder prediction 742 759 - -
Vimu5g01936 896 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 67 94 IPR000571 GO:0046872
Vimu5g01936 896 MobiDBLite consensus disorder prediction 648 780 - -
Vimu5g01936 896 SMART c3hfinal6 66 94 IPR000571 GO:0046872
Vimu5g01936 896 MobiDBLite consensus disorder prediction 97 120 - -
Vimu5g01936 896 Pfam tRNA (Uracil-5-)-methyltransferase 780 831 IPR010280 GO:0006396|GO:0008173
Vimu5g01936 896 ProSiteProfiles Zinc finger C3H1-type profile. 66 95 IPR000571 GO:0046872
Vimu5g01936 896 CDD AdoMet_MTases 580 634 - -
Vimu5g01936 896 SUPERFAMILY RNA-binding domain, RBD 154 236 IPR035979 GO:0003676
Vimu5g01936 896 SUPERFAMILY CCCH zinc finger 64 99 IPR036855 GO:0046872
Vimu5g01936 896 MobiDBLite consensus disorder prediction 234 269 - -
Vimu5g01936 896 MobiDBLite consensus disorder prediction 1 43 - -
Vimu5g01936 896 MobiDBLite consensus disorder prediction 677 714 - -
Vimu5g01936 896 Gene3D - 149 237 IPR012677 -
Vimu5g01936 896 MobiDBLite consensus disorder prediction 1 62 - -
Vimu5g01936 896 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 283 896 IPR029063 -
Vimu5g01936 896 Gene3D - 351 549 - -
Vimu5g01936 896 MobiDBLite consensus disorder prediction 234 248 - -
Vimu5g01936 896 Gene3D - 58 100 - -
Vimu5g01936 896 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 83 896 IPR045850 -
Vimu5g01936 896 Gene3D Vaccinia Virus protein VP39 550 649 IPR029063 -
Vimu5g01936 896 ProSitePatterns RNA methyltransferase trmA family signature 1. 791 823 IPR030390 -
Vimu5g01936 896 Gene3D Vaccinia Virus protein VP39 758 896 IPR029063 -
Vimu5g01936 896 Pfam Methyltransferase domain 578 636 IPR025714 -
Vimu5g01936 896 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 280 896 IPR010280 GO:0006396|GO:0008173
Vimu5g01936 896 MobiDBLite consensus disorder prediction 255 269 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu5g01936 tRNA_U5-meth_tr 1.1e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01936 K15332 - gmx:100816103 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01936 5 31257473 31262947 Vimu5g01936 5 31257473 31262947 ECH