Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01935 ATGAGTACAGAGGAAAAGCCTGTGAATGAGGAAAATGAAGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAGCCTCGCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCATCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCAATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCTACACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGAACTTCAGCAGCAGATGTTGAAAAGGCAAATACTGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAACGTCATCATTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGACAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTAGAGTAAAGGAAGGAGATGTATTGGTAGACACATCAACAAACGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGCGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAAGAGGAAGTTCGGAACCTACCTGTCACTCTATTAAGGATCCAAAGTGTTCGAAATCGGAATAATGGTGCAAATAGGGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTGGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGAGCACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTATGGTGGTTCTCTTTGCGCATATTTTTTACTCCGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGCAGTTCTATACTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAGGCATCAGAACAGCGACAAGGCCCTCAATTGATGCCACAAACAGGACAAAATCCACAATCTTCAAACACTCCTAATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAACCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1518 0.4275 MSTEEKPVNEENEAGSCRRTVSLPVQKVDDPMGITEEASHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTHNSPGPSTSRGKSAIRSLLPKLSFRYRTSAADVEKANTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRVKEGDVLVDTSTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNNGANRVWQEVPVLVIVSMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFAMVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQASEQRQGPQLMPQTGQNPQSSNTPNSDSGSGPSNHSQPVVQNEQNSNQS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01935 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Vimu5g01935 505 MobiDBLite consensus disorder prediction 459 505 - -
Vimu5g01935 505 MobiDBLite consensus disorder prediction 171 210 - -
Vimu5g01935 505 MobiDBLite consensus disorder prediction 53 71 - -
Vimu5g01935 505 MobiDBLite consensus disorder prediction 1 110 - -
Vimu5g01935 505 SMART ringv_2 263 312 IPR011016 GO:0008270
Vimu5g01935 505 MobiDBLite consensus disorder prediction 79 110 - -
Vimu5g01935 505 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Vimu5g01935 505 MobiDBLite consensus disorder prediction 172 188 - -
Vimu5g01935 505 PANTHER OS02G0165000 PROTEIN 20 462 - -
Vimu5g01935 505 CDD RING_CH-C4HC3_MARCH 264 312 - -
Vimu5g01935 505 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Vimu5g01935 505 SUPERFAMILY RING/U-box 260 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01935 Vimu-Chr5 31237195 31242211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01935 261 318 C3H Transcription Factor Family AT2G37950 49.153 3.36e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00621 4 4617534 4620605 Vimu5g01935 5 31237195 31242211 PCT