Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01929 TTTGGTGTTGTAGGAGGACACATAAACCCAGCAGTGACATTCGGGCTGTTCCTAGGACGCAAGGTATCGTTGATAAGGGCGTTGTTGTACATTGTAGCACAGTGTGCTGGTGCTATCTGTGGCACTGGACTGGCGAAGGTGTTCCAAAAGACGTACTACAACAGGTATGGAGGTGGTGCTAACTTTGTTGCCGATGGCTGCAACAAGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCTATATTCCTGTACTAGCACCACTCCCGATTGGCTTTGCTGTGTTCGTGGTTCATTTGGCTACAATCCCAGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGAAAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTATACCACCAATACATCCTTAGAGCATCAACTATCAAGTCTCTTGGATCATTCAGGAGCCATAGTTAA 564 0.477 FGVVGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKVFQKTYYNRYGGGANFVADGCNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSYIPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIYNDEKIWDDQWIFWVGPIVGAAVAALYHQYILRASTIKSLGSFRSHS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01929 187 ProSitePatterns MIP family signature. 7 15 IPR022357 -
Vimu5g01929 187 Pfam Major intrinsic protein 2 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 CDD MIP 2 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 SUPERFAMILY Aquaporin-like 2 173 IPR023271 -
Vimu5g01929 187 PRINTS Major intrinsic protein family signature 151 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 PRINTS Major intrinsic protein family signature 26 45 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 PRINTS Major intrinsic protein family signature 75 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 PRINTS Major intrinsic protein family signature 111 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01929 187 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 176 IPR034294 -
Vimu5g01929 187 Gene3D Glycerol uptake facilitator protein. 1 187 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01929 Vimu-Chr5 31202288 31203081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01929 2 185 Major Intrinsic Protein MIP AT5G60660 81.522 2.16e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01929 K09872 - gmx:100811119 344.739