Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01928 ATGGCTGAAGATGTTGAGCAAGGAGAATACCCAGCAAGAGACTATTATGATCCTCCTCCAGCACCTTTGTTCGACCGTAAAGAGCTCACACAGTGGTCCTTCTATAGAGCCATTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATGTCACTGTCCTCACCATTATTGGCAACAAAAGACAGATTGATACCACCGAATGTGATGGGGTTGGCATTATCGGCGTCGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCCGGTATTTCAGGTATACATCTCTCACCCCTTTCAATTTCCTCTCTCTCAGACACCACAAATGTGCCCTTCTATGCTTTCAACTTTCAACTTTTGTACATGAAAAAGGCAAAATTTTGGACAACTTTTGTATATGCTCACACGTTAAATCTGCTATAA 432 0.4329 MAEDVEQGEYPARDYYDPPPAPLFDRKELTQWSFYRAIIAEFIATLLFLYVTVLTIIGNKRQIDTTECDGVGIIGVAWAFGGMIFILVYCTAGISGIHLSPLSISSLSDTTNVPFYAFNFQLLYMKKAKFWTTFVYAHTLNLL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01928 143 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 101 IPR034294 -
Vimu5g01928 143 Gene3D Glycerol uptake facilitator protein. 21 122 IPR023271 -
Vimu5g01928 143 Pfam Major intrinsic protein 28 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01928 143 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01928 143 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01928 143 SUPERFAMILY Aquaporin-like 27 102 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01928 Vimu-Chr5 31201638 31202069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01928 1 101 Major Intrinsic Protein MIP AT2G37180 68.868 2.70e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01928 K09872 - gmx:100811119 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00629 4 4655849 4656989 Vimu5g01928 5 31201638 31202069 PCT