Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01927 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGAATACTCTGCAAAAGACTATCATGATCCTCCTCCAGCACCCTTGTTCGACCCCGAAGAGCTCACACAGTGGTCCTTCTATAGAGCCCTTATCGCTGAGTTCATAGCAACCCTTCTCTTCCTCTATATCACTGTCCTCACCATAATTGGCTACAAAAGACAGACTGATACCAACGTTGGTGGCACCGAATGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACTGCCGGTATTTCAGGAGGACACATAAACCCAGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGGTGTCGTTGATAAGGGCGTTGTTGTACATTGTAGCACAGTGTGCCGGTGCTATCTGCGGCACTGGACTGGCGAAGGGGTTCCAAAAGGCGTACTACAACAGGTATGGAGGCGGTGCTAACTCTGTTGCTGATGGCTACAACAAGGGCACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTAAGCACCACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATAAATGTTACAAACTTATTTCTTAAAAAATTAGTTACTAATTCATGGTCTTACTTTTTCAATATGAAGGTACTAGCACCACTCCCTATTGGCTTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCAGTTACTGGCACAGGCATTAACCCAGCAAGGAGTTTTGGAGCAGCTGTAATCTACAATGACGACAAAATCTGGGATGATCAGTGGATTTTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCATTCAGGAGCAATGCTTAA 1002 0.4571 MAKDVEVQEQGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYITVLTIIGYKRQTDTNVGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYIVAQCAGAICGTGLAKGFQKAYYNRYGGGANSVADGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVSTTHTHTHTHTHTHIYIYIYIYIYINVTNLFLKKLVTNSWSYFFNMKVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01927 333 Gene3D Glycerol uptake facilitator protein. 24 333 IPR023271 -
Vimu5g01927 333 CDD MIP 39 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PRINTS Major intrinsic protein family signature 257 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PRINTS Major intrinsic protein family signature 297 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 322 IPR034294 -
Vimu5g01927 333 Pfam Major intrinsic protein 31 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 Pfam Major intrinsic protein 250 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu5g01927 333 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vimu5g01927 333 SUPERFAMILY Aquaporin-like 30 319 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01927 Vimu-Chr5 31183754 31185267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01927 1 331 Major Intrinsic Protein MIP AT5G60660 69.184 1.63e-166 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01927 K09872 - gmx:100811119 545.043