Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01926 ATGCCGCCGAAGTTTGACCCATCCCAGGTCGTTGACGTCTTCGTCCGAGTCACCGGTGGCGAGGTTGGAGCGGCGAGTTCGCTCGCTCCTAAGATCGGTCCTCTCGGTCTCTCCCCCAAGAAGATCGGTGAAGACATCGCCAAGGAAACTGCTAAGGACTGGAAGGGTCTCAGAGTGACCGTCAAGCTCACCGTGCAAAACCGTCAGGCCAAAGTCTCCGTGGTTCCCTCTGCCGCGGCGCTCGTCATCAAGGCCCTTAAGGAGCCCGAGCGCGACCGGAAGAAGACCAAAAACATTAAGCATAATGGAAACATCTCACTCGATGACGTTATTGAGATCGCTAGGGTTATGAGGCCTAGGTCTATGGCGAAGGACCTTAGCGGCACGATTAAGGAGATTCTCGGAACTTGCGTCTCCGTGGGATGCACAGTGGACGGAAAGGATCCTAAGGACTTGCAGCAGGAGATCACTGATGGTGATGTTGAGGTCCCTCTTGATTGA 501 0.5509 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01926 166 Gene3D - 82 164 IPR036769 -
Vimu5g01926 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Vimu5g01926 166 FunFam 60S ribosomal protein L12 82 164 - -
Vimu5g01926 166 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Vimu5g01926 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vimu5g01926 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vimu5g01926 166 Gene3D - 1 81 IPR036796 -
Vimu5g01926 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Vimu5g01926 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vimu5g01926 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vimu5g01926 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vimu5g01926 166 FunFam 60S ribosomal protein L12 1 81 - -
Vimu5g01926 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01926 Vimu-Chr5 31174345 31177282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01926 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.024 8.23e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01926 K02870 - gmx:100811654 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01926 5 31174345 31177282 Vimu5g01926 5 31174345 31177282 ECH